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EVA summary for category sec (3)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 220 36 method/index.html
APSSP   21235method/apssp.html
APSSP2   19233method/apssp2.html
JPred   16931method/jpred.html
PHD   15323method/phd.html
PHDpsi   15223method/phdpsi.html
PROF_king   16431method/prof_king.html
PROFsec   15323method/profsec.html
Prospect   11825method/prospect.html
PSIpred   19835method/psipred.html
PSSP   11method/pssp.html
SAM-T99sec   17034method/samt99_sec.html
SSpro1   11method/sspro1.html
SSpro2   21736method/sspro2.html

 


Comparison of secondary structure prediction methods (detail level 3)

Averages compiled over different subsets

 


Set 1

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 138dssp1APSSP275.5+/-1.579.1+/-5.377.6+/-5.560.0+/-5.174.0+/-6.278.0+/-2.370.6+/-2.070.8+/-2.573.0+/-4.176.6+/-3.870.5+/-2.52.4+/-0.50.37+/-0.030.66+/-0.040.58+/-0.040.53+/-0.0389.5+/-5.06.7+/-1.26.2+/-1.0
JPred73.0+/-1.570.6+/-5.680.8+/-6.055.4+/-4.873.2+/-6.381.2+/-2.564.9+/-2.270.0+/-2.568.6+/-4.674.9+/-3.968.4+/-2.51.9+/-0.40.32+/-0.020.63+/-0.040.55+/-0.040.51+/-0.0376.3+/-7.07.3+/-1.57.4+/-1.2
PHDpsi74.7+/-1.777.0+/-5.978.3+/-5.862.5+/-5.570.4+/-5.875.9+/-2.469.9+/-2.470.5+/-2.570.6+/-4.575.2+/-4.267.8+/-2.51.7+/-0.40.35+/-0.020.65+/-0.040.57+/-0.040.50+/-0.0386.8+/-5.66.6+/-1.06.6+/-1.4
PROF_king73.2+/-1.772.7+/-6.281.9+/-6.666.9+/-5.963.3+/-5.676.5+/-2.368.5+/-2.270.4+/-2.865.5+/-5.276.3+/-4.569.5+/-2.73.2+/-0.80.32+/-0.020.65+/-0.040.56+/-0.040.50+/-0.0373.7+/-7.28.6+/-1.36.6+/-1.3
PROFsec77.1+/-1.578.9+/-6.180.7+/-6.170.1+/-5.671.8+/-5.775.1+/-2.373.4+/-2.175.2+/-2.373.7+/-4.680.9+/-3.470.3+/-2.41.8+/-0.40.38+/-0.030.69+/-0.030.63+/-0.040.54+/-0.0386.8+/-5.66.2+/-1.14.2+/-0.8
Prospect73.2+/-1.476.8+/-5.676.2+/-5.955.6+/-5.170.4+/-6.277.0+/-2.567.0+/-2.069.8+/-2.572.9+/-4.573.2+/-4.167.6+/-2.32.4+/-0.50.33+/-0.030.62+/-0.050.54+/-0.040.49+/-0.0276.3+/-7.06.1+/-0.98.4+/-1.3
PSIpred77.0+/-1.781.5+/-5.578.1+/-5.665.2+/-5.574.4+/-6.377.3+/-2.473.2+/-2.273.4+/-2.476.1+/-3.976.9+/-3.869.8+/-2.62.2+/-0.50.40+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0384.2+/-6.05.1+/-1.26.2+/-1.0
SAM-T99sec76.2+/-1.584.3+/-5.575.9+/-5.361.9+/-5.376.5+/-6.375.1+/-2.871.3+/-2.171.2+/-2.575.2+/-3.776.2+/-3.968.1+/-2.81.8+/-0.40.38+/-0.030.68+/-0.040.61+/-0.040.53+/-0.0384.2+/-6.05.7+/-1.26.3+/-1.1
SSpro275.4+/-1.481.2+/-6.078.1+/-5.661.6+/-5.372.7+/-5.977.0+/-2.370.6+/-2.169.6+/-2.071.1+/-4.375.1+/-3.969.4+/-2.42.4+/-0.40.36+/-0.030.68+/-0.040.59+/-0.040.53+/-0.0273.7+/-7.26.3+/-1.16.7+/-1.2
common 138dssp2PHD70.9+/-2.174.3+/-6.574.1+/-6.059.4+/-5.564.0+/-5.873.0+/-2.768.0+/-2.666.0+/-2.665.6+/-5.172.4+/-4.263.7+/-2.63.7+/-1.10.31+/-0.030.60+/-0.050.51+/-0.050.46+/-0.0381.6+/-6.49.1+/-1.48.7+/-1.6

 


Set 2

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 266dssp1JPred72.6+/-1.470.6+/-4.680.8+/-5.155.4+/-4.273.2+/-5.481.7+/-1.766.8+/-1.867.8+/-2.464.0+/-4.174.2+/-3.366.2+/-2.31.8+/-0.30.32+/-0.020.63+/-0.030.55+/-0.040.51+/-0.0380.3+/-4.97.9+/-1.37.1+/-0.9
PHDpsi74.0+/-1.277.0+/-4.578.3+/-4.462.5+/-4.670.4+/-4.973.3+/-2.171.3+/-1.868.2+/-2.166.7+/-3.776.6+/-3.264.5+/-2.21.9+/-0.30.32+/-0.020.65+/-0.030.57+/-0.040.50+/-0.0286.4+/-4.37.0+/-0.85.9+/-0.9
PROF_king73.3+/-1.372.7+/-4.781.9+/-5.166.9+/-4.963.3+/-4.775.6+/-1.870.1+/-1.768.4+/-2.362.2+/-4.178.4+/-3.366.8+/-2.32.8+/-0.50.32+/-0.020.65+/-0.030.56+/-0.040.50+/-0.0278.8+/-5.18.0+/-0.97.0+/-1.0
PROFsec76.7+/-1.178.9+/-4.780.7+/-4.870.1+/-4.971.8+/-4.974.2+/-1.974.6+/-1.672.5+/-2.169.3+/-3.982.4+/-2.667.5+/-2.31.7+/-0.30.36+/-0.020.69+/-0.030.63+/-0.030.54+/-0.0287.9+/-4.06.6+/-0.84.5+/-0.6
PSIpred76.0+/-1.481.5+/-4.278.1+/-4.165.2+/-4.874.4+/-5.376.3+/-1.873.8+/-1.770.6+/-2.273.6+/-3.277.2+/-3.365.9+/-2.42.1+/-0.40.37+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0383.3+/-4.65.9+/-1.05.9+/-0.7
SAM-T99sec74.9+/-1.384.3+/-4.375.9+/-4.061.9+/-4.576.5+/-5.372.1+/-2.372.7+/-1.768.3+/-2.271.1+/-3.377.0+/-3.163.8+/-2.31.8+/-0.30.35+/-0.020.68+/-0.030.61+/-0.030.53+/-0.0384.8+/-4.46.5+/-0.95.8+/-0.8
SSpro274.8+/-1.281.2+/-4.578.1+/-4.261.6+/-4.572.7+/-5.075.3+/-1.872.2+/-1.768.2+/-2.068.8+/-3.777.2+/-3.165.9+/-2.22.5+/-0.30.34+/-0.020.68+/-0.030.59+/-0.030.53+/-0.0275.8+/-5.36.3+/-0.86.3+/-0.8
common 266dssp2PHD70.4+/-1.474.3+/-5.074.1+/-4.659.4+/-4.564.0+/-4.669.8+/-2.269.6+/-1.864.0+/-2.061.3+/-4.074.5+/-3.260.3+/-2.13.8+/-0.70.27+/-0.020.60+/-0.040.51+/-0.040.46+/-0.0278.8+/-5.19.1+/-1.08.0+/-1.1

 


Set 3

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 366dssp1JPred72.6+/-1.470.6+/-4.680.8+/-5.155.4+/-4.273.2+/-5.481.7+/-1.766.8+/-1.867.8+/-2.464.0+/-4.174.2+/-3.366.2+/-2.31.8+/-0.30.32+/-0.020.63+/-0.030.55+/-0.040.51+/-0.0380.3+/-4.97.9+/-1.37.1+/-0.9
PHDpsi74.0+/-1.277.0+/-4.578.3+/-4.462.5+/-4.670.4+/-4.973.3+/-2.171.3+/-1.868.2+/-2.166.7+/-3.776.6+/-3.264.5+/-2.21.9+/-0.30.32+/-0.020.65+/-0.030.57+/-0.040.50+/-0.0286.4+/-4.37.0+/-0.85.9+/-0.9
PROF_king73.3+/-1.372.7+/-4.781.9+/-5.166.9+/-4.963.3+/-4.775.6+/-1.870.1+/-1.768.4+/-2.362.2+/-4.178.4+/-3.366.8+/-2.32.8+/-0.50.32+/-0.020.65+/-0.030.56+/-0.040.50+/-0.0278.8+/-5.18.0+/-0.97.0+/-1.0
PROFsec76.7+/-1.178.9+/-4.780.7+/-4.870.1+/-4.971.8+/-4.974.2+/-1.974.6+/-1.672.5+/-2.169.3+/-3.982.4+/-2.667.5+/-2.31.7+/-0.30.36+/-0.020.69+/-0.030.63+/-0.030.54+/-0.0287.9+/-4.06.6+/-0.84.5+/-0.6
PSIpred76.0+/-1.481.5+/-4.278.1+/-4.165.2+/-4.874.4+/-5.376.3+/-1.873.8+/-1.770.6+/-2.273.6+/-3.277.2+/-3.365.9+/-2.42.1+/-0.40.37+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0383.3+/-4.65.9+/-1.05.9+/-0.7
SAM-T99sec74.9+/-1.384.3+/-4.375.9+/-4.061.9+/-4.576.5+/-5.372.1+/-2.372.7+/-1.768.3+/-2.271.1+/-3.377.0+/-3.163.8+/-2.31.8+/-0.30.35+/-0.020.68+/-0.030.61+/-0.030.53+/-0.0384.8+/-4.46.5+/-0.95.8+/-0.8
common 366dssp2PHD70.4+/-1.474.3+/-5.074.1+/-4.659.4+/-4.564.0+/-4.669.8+/-2.269.6+/-1.864.0+/-2.061.3+/-4.074.5+/-3.260.3+/-2.13.8+/-0.70.27+/-0.020.60+/-0.040.51+/-0.040.46+/-0.0278.8+/-5.19.1+/-1.08.0+/-1.1

 


Set 4

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 496dssp1JPred72.6+/-1.270.6+/-3.880.8+/-4.255.4+/-3.373.2+/-4.382.6+/-1.466.4+/-1.468.4+/-1.863.2+/-3.573.0+/-2.667.9+/-1.82.4+/-0.40.32+/-0.020.63+/-0.030.55+/-0.030.51+/-0.0281.2+/-4.08.4+/-1.07.7+/-0.9
PHDpsi73.8+/-1.277.0+/-3.878.3+/-3.862.5+/-3.770.4+/-3.974.0+/-1.771.2+/-1.568.9+/-1.765.6+/-3.475.9+/-2.665.2+/-1.72.4+/-0.50.33+/-0.020.65+/-0.030.57+/-0.030.50+/-0.0283.3+/-3.87.5+/-0.87.1+/-0.9
PROFsec76.1+/-1.178.9+/-4.080.7+/-4.070.1+/-3.971.8+/-3.974.3+/-1.673.8+/-1.472.6+/-1.768.7+/-3.581.1+/-2.267.1+/-1.82.2+/-0.50.37+/-0.020.69+/-0.030.63+/-0.030.54+/-0.0287.5+/-3.46.7+/-0.85.9+/-0.8
PSIpred75.3+/-1.381.5+/-3.678.1+/-3.665.2+/-3.874.4+/-4.275.7+/-1.573.3+/-1.571.3+/-1.872.3+/-3.076.7+/-2.667.6+/-1.82.7+/-0.40.36+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0282.3+/-3.96.6+/-0.86.1+/-0.7
SAM-T99sec75.0+/-1.184.3+/-3.675.9+/-3.361.9+/-3.676.5+/-4.271.7+/-2.071.9+/-1.769.5+/-1.770.7+/-3.076.1+/-2.563.2+/-2.02.2+/-0.40.35+/-0.020.68+/-0.030.61+/-0.030.53+/-0.0286.5+/-3.56.3+/-0.76.3+/-0.7
common 496dssp2PHD70.0+/-1.374.3+/-4.174.1+/-3.859.4+/-3.664.0+/-3.770.9+/-1.769.7+/-1.565.3+/-1.860.9+/-3.573.1+/-2.662.6+/-1.74.6+/-0.80.29+/-0.020.60+/-0.030.51+/-0.030.46+/-0.0279.2+/-4.29.1+/-0.98.1+/-1.0

 


Set 5

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 5111dssp1PROFsec75.2+/-1.178.9+/-3.880.7+/-3.870.1+/-3.671.8+/-3.674.1+/-1.473.2+/-1.271.7+/-1.669.7+/-3.278.5+/-2.266.6+/-1.72.4+/-0.50.35+/-0.020.69+/-0.030.63+/-0.020.54+/-0.0286.5+/-3.37.0+/-0.86.3+/-0.8
PSIpred74.9+/-1.281.5+/-3.478.1+/-3.465.2+/-3.574.4+/-3.975.5+/-1.473.3+/-1.371.0+/-1.773.3+/-2.874.9+/-2.567.8+/-1.82.7+/-0.40.36+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0283.8+/-3.56.9+/-0.86.2+/-0.7
SAM-T99sec74.3+/-1.184.3+/-3.575.9+/-3.261.9+/-3.476.5+/-3.971.3+/-1.871.9+/-1.569.0+/-1.671.3+/-2.874.0+/-2.563.1+/-1.82.4+/-0.40.34+/-0.020.68+/-0.030.61+/-0.030.53+/-0.0287.4+/-3.26.7+/-0.76.6+/-0.7
common 5111dssp2PHDpsi72.6+/-1.177.0+/-3.778.3+/-3.762.5+/-3.470.4+/-3.673.3+/-1.570.3+/-1.468.0+/-1.666.6+/-3.173.4+/-2.564.2+/-1.62.6+/-0.50.32+/-0.020.65+/-0.030.57+/-0.030.50+/-0.0283.8+/-3.58.1+/-0.87.5+/-0.9
common 5111dssp3PHD69.3+/-1.374.3+/-3.874.1+/-3.759.4+/-3.364.0+/-3.470.6+/-1.669.2+/-1.464.8+/-1.662.5+/-3.270.9+/-2.562.2+/-1.64.7+/-0.70.28+/-0.020.60+/-0.030.51+/-0.030.46+/-0.0280.2+/-3.89.6+/-0.98.2+/-0.9

 


Set 6

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 6149dssp1PROFsec75.1+/-1.078.9+/-3.180.7+/-3.170.1+/-3.171.8+/-3.274.1+/-1.372.4+/-1.071.8+/-1.469.5+/-2.777.1+/-2.066.6+/-1.42.5+/-0.40.36+/-0.010.69+/-0.020.63+/-0.020.54+/-0.0285.2+/-2.97.1+/-0.66.3+/-0.7
PSIpred75.1+/-1.181.5+/-2.878.1+/-2.865.2+/-3.074.4+/-3.475.4+/-1.273.0+/-1.172.1+/-1.474.1+/-2.375.5+/-2.268.5+/-1.52.7+/-0.30.37+/-0.020.68+/-0.020.62+/-0.020.55+/-0.0283.9+/-3.06.7+/-0.75.9+/-0.6
common 6149dssp2PHDpsi72.5+/-1.077.0+/-3.178.3+/-3.062.5+/-3.070.4+/-3.273.1+/-1.369.7+/-1.268.0+/-1.466.1+/-2.772.6+/-2.264.4+/-1.42.9+/-0.40.32+/-0.010.65+/-0.020.57+/-0.020.50+/-0.0281.2+/-3.28.2+/-0.77.5+/-0.8
common 6149dssp3PHD69.3+/-1.174.3+/-3.174.1+/-3.059.4+/-2.864.0+/-3.070.2+/-1.368.6+/-1.265.5+/-1.563.1+/-2.770.1+/-2.262.7+/-1.44.7+/-0.60.28+/-0.010.60+/-0.030.51+/-0.030.46+/-0.0277.9+/-3.49.2+/-0.88.1+/-0.8

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