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EVA summary for category sec (3)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 219 36 method/index.html
APSSP   20935method/apssp.html
APSSP2   18933method/apssp2.html
JPred   16729method/jpred.html
PHD   15223method/phd.html
PHDpsi   15123method/phdpsi.html
PROF_king   16131method/prof_king.html
PROFsec   15223method/profsec.html
Prospect   11624method/prospect.html
PSIpred   19535method/psipred.html
PSSP   11method/pssp.html
SAM-T99sec   14834method/samt99_sec.html
SSpro1   11method/sspro1.html
SSpro2   21436method/sspro2.html

 


Comparison of secondary structure prediction methods (detail level 3)

Averages compiled over different subsets

 


Set 1

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 132dssp1APSSP276.1+/-1.679.2+/-5.877.7+/-5.960.1+/-5.773.8+/-7.078.2+/-2.670.7+/-2.370.6+/-2.875.8+/-4.178.7+/-3.770.4+/-2.92.3+/-0.50.38+/-0.030.66+/-0.040.59+/-0.050.53+/-0.0390.6+/-5.26.6+/-1.16.1+/-1.0
JPred73.6+/-1.770.6+/-6.181.3+/-6.655.9+/-5.373.1+/-7.080.9+/-2.864.9+/-2.670.6+/-2.871.7+/-4.977.9+/-3.768.9+/-2.91.7+/-0.40.33+/-0.030.64+/-0.040.56+/-0.050.51+/-0.0378.1+/-7.47.2+/-1.77.2+/-1.4
PHDpsi75.3+/-1.977.0+/-6.578.2+/-6.462.6+/-6.370.3+/-6.776.3+/-2.770.3+/-2.870.2+/-2.972.8+/-4.877.3+/-4.567.0+/-2.91.6+/-0.40.36+/-0.030.65+/-0.040.57+/-0.050.49+/-0.0390.6+/-5.26.8+/-1.06.7+/-1.6
PROF_king73.8+/-1.972.8+/-6.782.2+/-7.367.1+/-6.663.1+/-6.376.4+/-2.768.9+/-2.670.3+/-3.268.9+/-5.578.3+/-4.669.3+/-3.13.3+/-1.00.34+/-0.030.66+/-0.050.56+/-0.050.50+/-0.0378.1+/-7.48.2+/-1.46.6+/-1.4
PROFsec77.5+/-1.679.0+/-6.780.7+/-6.770.2+/-6.571.7+/-6.775.5+/-2.673.3+/-2.475.3+/-2.675.8+/-4.982.5+/-3.570.4+/-2.91.7+/-0.40.39+/-0.030.69+/-0.040.63+/-0.040.54+/-0.0387.5+/-5.96.1+/-1.24.2+/-0.9
Prospect73.5+/-1.577.0+/-6.176.6+/-6.456.2+/-5.770.5+/-6.976.8+/-2.866.7+/-2.369.6+/-2.875.1+/-4.775.9+/-4.166.9+/-2.62.3+/-0.50.33+/-0.030.63+/-0.050.55+/-0.050.49+/-0.0378.1+/-7.46.1+/-0.98.0+/-1.4
PSIpred77.6+/-1.881.6+/-6.078.2+/-6.165.3+/-6.274.2+/-7.177.6+/-2.773.2+/-2.573.3+/-2.778.9+/-3.978.9+/-3.769.5+/-3.02.0+/-0.60.41+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0384.4+/-6.55.0+/-1.16.0+/-1.1
SAM-T99sec76.8+/-1.683.9+/-5.976.0+/-5.762.6+/-5.975.5+/-7.075.2+/-3.272.0+/-2.371.2+/-2.877.6+/-3.678.1+/-3.968.7+/-3.21.6+/-0.50.39+/-0.030.68+/-0.040.61+/-0.040.52+/-0.0384.4+/-6.55.6+/-1.36.0+/-1.1
SSpro275.8+/-1.581.3+/-6.678.3+/-6.162.0+/-6.172.6+/-6.977.3+/-2.670.6+/-2.569.6+/-2.273.0+/-4.577.0+/-4.170.0+/-2.72.4+/-0.40.37+/-0.030.68+/-0.040.59+/-0.040.53+/-0.0371.9+/-8.16.3+/-1.16.8+/-1.4
common 132dssp2PHD70.6+/-2.474.2+/-7.474.2+/-6.659.7+/-6.263.9+/-6.472.4+/-3.067.9+/-3.064.8+/-3.065.9+/-5.574.3+/-4.462.4+/-3.04.1+/-1.30.31+/-0.030.60+/-0.050.51+/-0.050.46+/-0.0384.4+/-6.59.6+/-1.69.2+/-1.9

 


Set 2

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 256dssp1JPred72.3+/-1.570.6+/-5.281.3+/-5.855.9+/-4.673.1+/-5.781.5+/-2.066.1+/-2.066.9+/-2.663.4+/-4.574.9+/-3.565.5+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0382.1+/-5.27.9+/-1.57.1+/-1.0
PHDpsi74.1+/-1.477.0+/-5.178.2+/-5.062.6+/-5.070.3+/-5.273.1+/-2.371.3+/-2.067.2+/-2.466.4+/-4.177.1+/-3.463.4+/-2.51.7+/-0.40.32+/-0.020.65+/-0.040.57+/-0.040.49+/-0.0389.3+/-4.27.1+/-0.85.9+/-1.0
PROF_king72.9+/-1.472.8+/-5.382.2+/-5.867.1+/-5.263.1+/-5.075.0+/-2.069.6+/-1.966.9+/-2.661.7+/-4.578.7+/-3.565.6+/-2.62.8+/-0.60.31+/-0.020.66+/-0.040.56+/-0.040.50+/-0.0382.1+/-5.27.8+/-1.07.3+/-1.1
PROFsec76.5+/-1.379.0+/-5.380.7+/-5.470.2+/-5.271.7+/-5.373.9+/-2.274.3+/-1.971.8+/-2.468.6+/-4.382.9+/-2.867.3+/-2.61.6+/-0.30.36+/-0.030.69+/-0.040.63+/-0.030.54+/-0.0389.3+/-4.26.6+/-0.94.5+/-0.7
PSIpred75.7+/-1.681.6+/-4.778.2+/-4.665.3+/-5.274.2+/-5.776.5+/-2.073.3+/-2.069.7+/-2.573.8+/-3.577.2+/-3.565.6+/-2.72.1+/-0.40.38+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0383.9+/-5.06.1+/-1.06.1+/-0.8
SAM-T99sec74.7+/-1.583.9+/-4.876.0+/-4.462.6+/-4.875.5+/-5.672.3+/-2.672.2+/-1.967.2+/-2.570.5+/-3.677.1+/-3.264.1+/-2.71.7+/-0.30.35+/-0.030.68+/-0.040.61+/-0.040.52+/-0.0385.7+/-4.76.5+/-1.05.7+/-0.8
SSpro274.7+/-1.481.3+/-5.178.3+/-4.762.0+/-4.872.6+/-5.475.5+/-2.071.9+/-1.967.7+/-2.368.2+/-4.177.6+/-3.366.4+/-2.52.4+/-0.30.35+/-0.020.68+/-0.040.59+/-0.040.53+/-0.0376.8+/-5.76.5+/-0.86.4+/-0.9
common 256dssp2PHD70.2+/-1.674.2+/-5.774.2+/-5.259.7+/-4.863.9+/-4.969.8+/-2.569.4+/-2.162.8+/-2.359.8+/-4.575.1+/-3.459.6+/-2.43.9+/-0.80.28+/-0.020.60+/-0.040.51+/-0.040.46+/-0.0282.1+/-5.29.5+/-1.18.2+/-1.3

 


Set 3

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 356dssp1JPred72.3+/-1.570.6+/-5.281.3+/-5.855.9+/-4.673.1+/-5.781.5+/-2.066.1+/-2.066.9+/-2.663.4+/-4.574.9+/-3.565.5+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0382.1+/-5.27.9+/-1.57.1+/-1.0
PHDpsi74.1+/-1.477.0+/-5.178.2+/-5.062.6+/-5.070.3+/-5.273.1+/-2.371.3+/-2.067.2+/-2.466.4+/-4.177.1+/-3.463.4+/-2.51.7+/-0.40.32+/-0.020.65+/-0.040.57+/-0.040.49+/-0.0389.3+/-4.27.1+/-0.85.9+/-1.0
PROF_king72.9+/-1.472.8+/-5.382.2+/-5.867.1+/-5.263.1+/-5.075.0+/-2.069.6+/-1.966.9+/-2.661.7+/-4.578.7+/-3.565.6+/-2.62.8+/-0.60.31+/-0.020.66+/-0.040.56+/-0.040.50+/-0.0382.1+/-5.27.8+/-1.07.3+/-1.1
PROFsec76.5+/-1.379.0+/-5.380.7+/-5.470.2+/-5.271.7+/-5.373.9+/-2.274.3+/-1.971.8+/-2.468.6+/-4.382.9+/-2.867.3+/-2.61.6+/-0.30.36+/-0.030.69+/-0.040.63+/-0.030.54+/-0.0389.3+/-4.26.6+/-0.94.5+/-0.7
PSIpred75.7+/-1.681.6+/-4.778.2+/-4.665.3+/-5.274.2+/-5.776.5+/-2.073.3+/-2.069.7+/-2.573.8+/-3.577.2+/-3.565.6+/-2.72.1+/-0.40.38+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0383.9+/-5.06.1+/-1.06.1+/-0.8
SAM-T99sec74.7+/-1.583.9+/-4.876.0+/-4.462.6+/-4.875.5+/-5.672.3+/-2.672.2+/-1.967.2+/-2.570.5+/-3.677.1+/-3.264.1+/-2.71.7+/-0.30.35+/-0.030.68+/-0.040.61+/-0.040.52+/-0.0385.7+/-4.76.5+/-1.05.7+/-0.8
common 356dssp2PHD70.2+/-1.674.2+/-5.774.2+/-5.259.7+/-4.863.9+/-4.969.8+/-2.569.4+/-2.162.8+/-2.359.8+/-4.575.1+/-3.459.6+/-2.43.9+/-0.80.28+/-0.020.60+/-0.040.51+/-0.040.46+/-0.0282.1+/-5.29.5+/-1.18.2+/-1.3

 


Set 4

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 481dssp1JPred72.6+/-1.270.6+/-4.281.3+/-4.755.9+/-3.673.1+/-4.682.3+/-1.566.6+/-1.667.6+/-1.962.6+/-3.873.5+/-2.767.6+/-2.02.3+/-0.40.32+/-0.020.64+/-0.030.56+/-0.030.51+/-0.0282.7+/-4.28.5+/-1.27.3+/-0.8
PHDpsi73.9+/-1.277.0+/-4.378.2+/-4.362.6+/-4.070.3+/-4.373.9+/-1.971.9+/-1.667.9+/-1.965.0+/-3.776.1+/-2.764.1+/-2.02.3+/-0.50.33+/-0.020.65+/-0.030.57+/-0.030.49+/-0.0285.2+/-4.07.6+/-0.86.9+/-0.9
PROFsec76.2+/-1.279.0+/-4.580.7+/-4.570.2+/-4.271.7+/-4.374.1+/-1.874.1+/-1.571.9+/-1.967.9+/-3.881.7+/-2.366.4+/-2.12.0+/-0.50.37+/-0.020.69+/-0.030.63+/-0.030.54+/-0.0288.9+/-3.56.8+/-0.85.8+/-0.8
PSIpred75.5+/-1.481.6+/-3.878.2+/-3.865.3+/-4.174.2+/-4.675.7+/-1.773.6+/-1.671.0+/-2.073.5+/-3.277.1+/-2.867.2+/-2.12.4+/-0.40.37+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0282.7+/-4.26.5+/-0.85.7+/-0.7
SAM-T99sec75.0+/-1.283.9+/-4.076.0+/-3.762.6+/-3.975.5+/-4.572.0+/-2.271.7+/-1.869.0+/-1.970.5+/-3.276.5+/-2.763.8+/-2.32.1+/-0.40.35+/-0.020.68+/-0.040.61+/-0.030.52+/-0.0287.7+/-3.76.2+/-0.76.0+/-0.7
common 481dssp2PHD70.1+/-1.574.2+/-4.674.2+/-4.359.7+/-3.963.9+/-4.071.0+/-2.070.4+/-1.764.6+/-1.960.2+/-3.973.8+/-2.862.1+/-2.04.7+/-0.90.29+/-0.020.60+/-0.040.51+/-0.030.46+/-0.0281.5+/-4.39.5+/-1.18.0+/-1.0

 


Set 5

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 596dssp1PROFsec75.1+/-1.279.0+/-4.280.7+/-4.270.2+/-3.971.7+/-3.973.9+/-1.673.4+/-1.471.0+/-1.869.2+/-3.578.6+/-2.466.0+/-1.92.3+/-0.50.35+/-0.020.69+/-0.030.63+/-0.030.54+/-0.0287.5+/-3.47.1+/-0.86.2+/-0.8
PSIpred75.0+/-1.381.6+/-3.778.2+/-3.765.3+/-3.774.2+/-4.175.4+/-1.673.6+/-1.570.7+/-1.974.4+/-2.974.9+/-2.767.5+/-2.02.5+/-0.40.36+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0284.4+/-3.76.8+/-0.85.9+/-0.6
SAM-T99sec74.2+/-1.183.9+/-3.876.0+/-3.562.6+/-3.675.5+/-4.171.5+/-2.071.7+/-1.668.5+/-1.771.2+/-3.074.1+/-2.763.6+/-2.02.4+/-0.40.34+/-0.020.68+/-0.030.61+/-0.030.52+/-0.0288.5+/-3.36.7+/-0.76.3+/-0.7
common 596dssp2PHDpsi72.6+/-1.277.0+/-4.178.2+/-4.062.6+/-3.670.3+/-3.973.1+/-1.770.8+/-1.567.0+/-1.866.2+/-3.473.2+/-2.763.1+/-1.82.5+/-0.50.32+/-0.020.65+/-0.030.57+/-0.030.49+/-0.0285.4+/-3.68.3+/-0.97.4+/-0.9
common 596dssp3PHD69.3+/-1.474.2+/-4.274.2+/-4.059.7+/-3.563.9+/-3.670.6+/-1.769.7+/-1.564.3+/-1.862.2+/-3.571.1+/-2.761.8+/-1.84.8+/-0.80.28+/-0.020.60+/-0.030.51+/-0.030.46+/-0.0282.3+/-3.910.0+/-1.18.1+/-1.0

 


Set 6

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 6148dssp1PROFsec75.1+/-1.079.0+/-3.180.7+/-3.170.2+/-3.271.7+/-3.274.0+/-1.372.4+/-1.171.8+/-1.469.4+/-2.777.2+/-2.166.6+/-1.42.5+/-0.40.36+/-0.010.69+/-0.020.63+/-0.020.54+/-0.0285.1+/-2.97.1+/-0.66.3+/-0.7
PSIpred75.1+/-1.181.6+/-2.878.2+/-2.865.3+/-3.074.2+/-3.475.3+/-1.273.0+/-1.272.1+/-1.574.0+/-2.475.5+/-2.268.5+/-1.52.7+/-0.30.37+/-0.020.68+/-0.020.62+/-0.020.55+/-0.0283.8+/-3.06.8+/-0.75.9+/-0.6
common 6148dssp2PHDpsi72.4+/-1.077.0+/-3.178.2+/-3.162.6+/-3.070.3+/-3.273.0+/-1.469.7+/-1.268.1+/-1.466.1+/-2.772.7+/-2.264.5+/-1.42.9+/-0.40.32+/-0.010.65+/-0.020.57+/-0.020.49+/-0.0281.1+/-3.28.2+/-0.77.5+/-0.8
common 6148dssp3PHD69.3+/-1.174.2+/-3.174.2+/-3.059.7+/-2.963.9+/-3.070.2+/-1.368.6+/-1.265.5+/-1.563.1+/-2.770.3+/-2.262.7+/-1.44.7+/-0.60.28+/-0.010.60+/-0.030.51+/-0.030.46+/-0.0277.7+/-3.49.2+/-0.88.1+/-0.8

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