EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	1534	106	method/index.html

APSSP	1154	57	method/apssp.html
	511	15	method/apssp2.html
JPred	1144	96	method/jpred.html
PHD	1479	105	method/phd.html
PHDpsi	1479	105	method/phdpsi.html
PROF_king	1137	84	method/prof_king.html
PROFsec	1434	103	method/profsec.html
PSIpred	1308	98	method/psipred.html
PSSP	369	57	method/pssp.html
SAM-T99sec	496	87	method/samt99_sec.html
SSpro1	275	44	method/sspro1.html
SSpro2	1185	57	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 119 proteins and 9 methods (HTML - ASCII)
- set 2: 121 proteins and 8 methods (HTML - ASCII)
- set 3: 112 proteins and 8 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 539 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	119	dssp	1	JPred	71.8	+/-1.1	66.0	+/-1.9	0.31	+/-0.02	81.5	+/-3.6
				PHDpsi	72.6	+/-0.9	67.1	+/-1.5	0.31	+/-0.02	84.9	+/-3.3
				PROF_king	71.7	+/-1.0	65.6	+/-1.7	0.29	+/-0.01	82.4	+/-3.5
				PROFsec	74.3	+/-0.9	69.6	+/-1.5	0.33	+/-0.02	82.4	+/-3.5
				PSIpred	74.0	+/-1.1	70.2	+/-1.7	0.39	+/-0.04	85.7	+/-3.2
				SAM-T99sec	73.6	+/-1.0	67.2	+/-1.6	0.36	+/-0.04	84.0	+/-3.4
				SSpro2	73.6	+/-1.0	67.1	+/-1.6	0.36	+/-0.04	81.5	+/-3.6
common 1	119	dssp	2	APSSP	67.7	+/-1.1	60.2	+/-1.7	0.24	+/-0.02	78.2	+/-3.8
				PHD	68.3	+/-1.1	63.1	+/-1.4	0.25	+/-0.01	78.2	+/-3.8

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	121	dssp	1	JPred	71.9	+/-1.1	66.3	+/-1.9	0.31	+/-0.02	81.8	+/-3.5
				PHDpsi	72.6	+/-0.9	67.2	+/-1.4	0.31	+/-0.01	85.1	+/-3.2
				PROF_king	71.8	+/-1.0	65.6	+/-1.7	0.29	+/-0.01	82.6	+/-3.5
				PROFsec	74.4	+/-0.9	69.7	+/-1.5	0.33	+/-0.01	82.6	+/-3.5
				PSIpred	74.1	+/-1.1	70.1	+/-1.6	0.38	+/-0.04	86.0	+/-3.2
				SAM-T99sec	73.7	+/-1.0	67.2	+/-1.5	0.36	+/-0.04	84.3	+/-3.3
				SSpro2	73.6	+/-1.0	67.1	+/-1.6	0.36	+/-0.04	81.8	+/-3.5
common 2	121	dssp	2	PHD	68.2	+/-1.1	63.0	+/-1.4	0.25	+/-0.01	78.5	+/-3.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	112	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	0.34	+/-0.02	79.5	+/-3.8
				PHDpsi	74.6	+/-0.9	68.4	+/-1.4	0.24	+/-0.07	81.2	+/-3.7
				PROF_king	74.3	+/-0.9	68.3	+/-1.5	0.32	+/-0.01	83.0	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	0.34	+/-0.01	82.1	+/-3.6
				PSIpred	76.2	+/-1.0	71.4	+/-1.5	0.36	+/-0.02	84.8	+/-3.4
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	0.35	+/-0.02	83.9	+/-3.5
				SSpro1	75.8	+/-1.0	68.8	+/-1.6	0.35	+/-0.02	80.4	+/-3.8
common 3	112	dssp	2	PHD	71.8	+/-1.0	66.9	+/-1.4	0.20	+/-0.07	81.2	+/-3.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	0.34	+/-0.01	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	0.26	+/-0.07	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	0.35	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	0.36	+/-0.01	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	0.35	+/-0.01	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	0.35	+/-0.01	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	0.22	+/-0.07	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	0.35	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	0.36	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	0.35	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	0.33	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	0.28	+/-0.04	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	0.24	+/-0.04	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	539	dssp	1	PROFsec	75.7	+/-0.4	71.5	+/-0.6	0.35	+/-0.01	82.7	+/-1.6
				PSIpred	75.6	+/-0.5	71.5	+/-0.7	0.37	+/-0.01	84.6	+/-1.6
common 6	539	dssp	2	PHDpsi	73.5	+/-0.5	68.5	+/-0.6	0.30	+/-0.02	81.1	+/-1.7
common 6	539	dssp	3	PHD	70.3	+/-0.5	66.0	+/-0.7	0.26	+/-0.02	77.6	+/-1.8