EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	1323	99	method/index.html

APSSP	956	50	method/apssp.html
	312	8	method/apssp2.html
JPred	995	90	method/jpred.html
PHD	1283	98	method/phd.html
PHDpsi	1284	98	method/phdpsi.html
PROF_king	900	77	method/prof_king.html
PROFsec	1239	96	method/profsec.html
PSIpred	1098	91	method/psipred.html
PSSP	369	57	method/pssp.html
SAM-T99sec	457	80	method/samt99_sec.html
SSpro1	275	44	method/sspro1.html
SSpro2	986	50	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 102 proteins and 9 methods (HTML - ASCII)
- set 2: 103 proteins and 8 methods (HTML - ASCII)
- set 3: 112 proteins and 8 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 495 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	102	dssp	1	JPred	72.1	+/-1.3	66.4	+/-2.1	2.1	+/-0.4	0.31	+/-0.02	0.67	+/-0.03	0.58	+/-0.03	0.55	+/-0.02	81.4	+/-3.9
				PHDpsi	72.4	+/-1.0	67.4	+/-1.6	2.6	+/-0.4	0.30	+/-0.02	0.67	+/-0.03	0.59	+/-0.03	0.53	+/-0.02	84.3	+/-3.6
				PROF_king	72.0	+/-1.1	65.9	+/-1.8	2.2	+/-0.3	0.30	+/-0.02	0.70	+/-0.03	0.61	+/-0.03	0.55	+/-0.02	82.4	+/-3.8
				PROFsec	74.2	+/-1.0	69.6	+/-1.7	2.2	+/-0.4	0.33	+/-0.02	0.70	+/-0.03	0.63	+/-0.03	0.57	+/-0.02	82.4	+/-3.8
				PSIpred	73.8	+/-1.2	69.9	+/-1.8	2.2	+/-0.4	0.39	+/-0.05	0.73	+/-0.03	0.66	+/-0.03	0.59	+/-0.02	85.3	+/-3.5
				SAM-T99sec	73.5	+/-1.1	67.3	+/-1.7	1.9	+/-0.2	0.36	+/-0.05	0.69	+/-0.03	0.63	+/-0.03	0.55	+/-0.02	83.3	+/-3.7
				SSpro2	73.2	+/-1.1	67.2	+/-1.8	2.8	+/-0.3	0.37	+/-0.05	0.73	+/-0.03	0.63	+/-0.03	0.59	+/-0.02	82.4	+/-3.8
common 1	102	dssp	2	APSSP	68.4	+/-1.2	60.8	+/-1.8	4.1	+/-0.4	0.24	+/-0.02	0.70	+/-0.03	0.64	+/-0.03	0.61	+/-0.03	81.4	+/-3.9
				PHD	68.5	+/-1.1	63.9	+/-1.5	4.5	+/-0.5	0.26	+/-0.02	0.60	+/-0.03	0.51	+/-0.03	0.48	+/-0.02	78.4	+/-4.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	103	dssp	1	JPred	72.3	+/-1.3	66.7	+/-2.1	2.0	+/-0.4	0.32	+/-0.02	0.67	+/-0.03	0.58	+/-0.03	0.55	+/-0.02	81.6	+/-3.8
				PHDpsi	72.5	+/-1.0	67.4	+/-1.6	2.6	+/-0.4	0.30	+/-0.02	0.67	+/-0.03	0.59	+/-0.03	0.53	+/-0.02	84.5	+/-3.6
				PROF_king	72.1	+/-1.1	65.9	+/-1.8	2.2	+/-0.3	0.29	+/-0.02	0.70	+/-0.03	0.61	+/-0.03	0.55	+/-0.02	82.5	+/-3.8
				PROFsec	74.2	+/-1.0	69.6	+/-1.6	2.1	+/-0.4	0.33	+/-0.02	0.70	+/-0.03	0.63	+/-0.03	0.57	+/-0.02	82.5	+/-3.8
				PSIpred	73.9	+/-1.2	69.9	+/-1.8	2.2	+/-0.4	0.39	+/-0.05	0.73	+/-0.03	0.66	+/-0.03	0.59	+/-0.02	85.4	+/-3.5
				SAM-T99sec	73.6	+/-1.1	67.3	+/-1.7	1.9	+/-0.2	0.36	+/-0.05	0.69	+/-0.03	0.63	+/-0.03	0.55	+/-0.02	83.5	+/-3.7
				SSpro2	73.3	+/-1.1	67.1	+/-1.8	2.8	+/-0.3	0.37	+/-0.05	0.73	+/-0.03	0.63	+/-0.03	0.59	+/-0.02	82.5	+/-3.8
common 2	103	dssp	2	PHD	68.6	+/-1.1	64.0	+/-1.5	4.4	+/-0.5	0.26	+/-0.01	0.60	+/-0.03	0.51	+/-0.03	0.48	+/-0.02	78.6	+/-4.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	112	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	1.8	+/-0.3	0.34	+/-0.02	0.67	+/-0.02	0.58	+/-0.03	0.55	+/-0.02	79.5	+/-3.8
				PHDpsi	74.6	+/-0.9	68.4	+/-1.4	2.7	+/-0.3	0.24	+/-0.07	0.67	+/-0.02	0.59	+/-0.03	0.53	+/-0.02	81.2	+/-3.7
				PROF_king	74.3	+/-0.9	68.3	+/-1.5	2.6	+/-0.3	0.32	+/-0.01	0.70	+/-0.02	0.61	+/-0.03	0.55	+/-0.02	83.0	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.70	+/-0.02	0.63	+/-0.02	0.57	+/-0.02	82.1	+/-3.6
				PSIpred	76.2	+/-1.0	71.4	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.73	+/-0.02	0.66	+/-0.03	0.59	+/-0.02	84.8	+/-3.4
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	1.7	+/-0.2	0.35	+/-0.02	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	83.9	+/-3.5
				SSpro1	75.8	+/-1.0	68.8	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.03	0.57	+/-0.02	80.4	+/-3.8
common 3	112	dssp	2	PHD	71.8	+/-1.0	66.9	+/-1.4	3.6	+/-0.4	0.20	+/-0.07	0.60	+/-0.02	0.51	+/-0.03	0.48	+/-0.01	81.2	+/-3.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.67	+/-0.02	0.58	+/-0.02	0.55	+/-0.02	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	2.6	+/-0.3	0.26	+/-0.07	0.67	+/-0.02	0.59	+/-0.02	0.53	+/-0.01	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	2.1	+/-0.2	0.35	+/-0.01	0.70	+/-0.02	0.63	+/-0.02	0.57	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	2.2	+/-0.3	0.36	+/-0.01	0.73	+/-0.02	0.66	+/-0.03	0.59	+/-0.02	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	3.5	+/-0.3	0.22	+/-0.07	0.60	+/-0.02	0.51	+/-0.02	0.48	+/-0.01	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	2.3	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.63	+/-0.02	0.57	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	2.4	+/-0.2	0.36	+/-0.01	0.73	+/-0.02	0.66	+/-0.02	0.59	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.61	+/-0.02	0.57	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	2.3	+/-0.2	0.33	+/-0.01	0.67	+/-0.02	0.58	+/-0.02	0.55	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	3.0	+/-0.3	0.28	+/-0.04	0.67	+/-0.01	0.59	+/-0.02	0.53	+/-0.01	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	4.0	+/-0.3	0.24	+/-0.04	0.60	+/-0.02	0.51	+/-0.02	0.48	+/-0.01	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	495	dssp	1	PROFsec	75.8	+/-0.4	71.5	+/-0.7	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.63	+/-0.01	0.57	+/-0.01	82.6	+/-1.7
				PSIpred	75.7	+/-0.5	71.5	+/-0.7	2.5	+/-0.2	0.37	+/-0.01	0.73	+/-0.01	0.66	+/-0.01	0.59	+/-0.01	84.0	+/-1.6
common 6	495	dssp	2	PHDpsi	73.7	+/-0.5	68.7	+/-0.7	3.0	+/-0.2	0.30	+/-0.02	0.67	+/-0.01	0.59	+/-0.01	0.53	+/-0.01	80.8	+/-1.8
common 6	495	dssp	3	PHD	70.6	+/-0.5	66.3	+/-0.7	4.4	+/-0.2	0.26	+/-0.02	0.60	+/-0.01	0.51	+/-0.01	0.48	+/-0.01	77.8	+/-1.9