EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	1021	94	method/index.html

APSSP	667	45	method/apssp.html
	23	3	method/apssp2.html
JPred	808	85	method/jpred.html
PHD	983	93	method/phd.html
PHDpsi	984	93	method/phdpsi.html
PROF_king	706	72	method/prof_king.html
PROFsec	942	91	method/profsec.html
PSIpred	798	86	method/psipred.html
PSSP	369	57	method/pssp.html
SAM-T99sec	407	76	method/samt99_sec.html
SSpro1	275	44	method/sspro1.html
SSpro2	686	45	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 85 proteins and 9 methods (HTML - ASCII)
- set 2: 86 proteins and 8 methods (HTML - ASCII)
- set 3: 112 proteins and 8 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 465 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	85	dssp	1	JPred	72.6	+/-1.4	67.5	+/-2.3	2.2	+/-0.4	0.32	+/-0.02	0.68	+/-0.03	0.59	+/-0.04	0.56	+/-0.02	81.2	+/-4.3
				PHDpsi	72.6	+/-1.1	68.7	+/-1.6	2.7	+/-0.4	0.32	+/-0.02	0.67	+/-0.03	0.58	+/-0.03	0.53	+/-0.02	83.5	+/-4.0
				PROF_king	71.9	+/-1.2	66.7	+/-1.9	2.3	+/-0.4	0.30	+/-0.02	0.70	+/-0.03	0.61	+/-0.03	0.56	+/-0.02	81.2	+/-4.3
				PROFsec	74.1	+/-1.1	70.3	+/-1.6	2.3	+/-0.4	0.33	+/-0.02	0.71	+/-0.03	0.63	+/-0.03	0.57	+/-0.02	81.2	+/-4.3
				PSIpred	74.2	+/-1.2	71.3	+/-1.8	2.1	+/-0.4	0.41	+/-0.06	0.72	+/-0.03	0.65	+/-0.03	0.59	+/-0.02	87.1	+/-3.7
				SAM-T99sec	74.2	+/-1.1	68.6	+/-1.7	2.0	+/-0.3	0.38	+/-0.06	0.69	+/-0.03	0.63	+/-0.03	0.56	+/-0.02	82.4	+/-4.2
				SSpro2	73.2	+/-1.2	67.8	+/-1.9	2.8	+/-0.4	0.38	+/-0.06	0.74	+/-0.03	0.64	+/-0.03	0.59	+/-0.02	83.5	+/-4.0
common 1	85	dssp	2	APSSP	67.9	+/-1.3	60.7	+/-2.0	4.3	+/-0.4	0.24	+/-0.02	0.67	+/-0.03	0.61	+/-0.04	0.59	+/-0.03	81.2	+/-4.3
				PHD	68.0	+/-1.3	64.7	+/-1.6	4.6	+/-0.5	0.26	+/-0.02	0.58	+/-0.03	0.48	+/-0.03	0.47	+/-0.02	78.8	+/-4.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	86	dssp	1	JPred	72.8	+/-1.4	67.9	+/-2.3	2.2	+/-0.4	0.33	+/-0.02	0.68	+/-0.03	0.59	+/-0.04	0.56	+/-0.02	81.4	+/-4.2
				PHDpsi	72.7	+/-1.1	68.7	+/-1.6	2.7	+/-0.4	0.32	+/-0.02	0.67	+/-0.03	0.58	+/-0.03	0.53	+/-0.02	83.7	+/-4.0
				PROF_king	72.0	+/-1.2	66.7	+/-1.9	2.3	+/-0.4	0.30	+/-0.02	0.70	+/-0.03	0.61	+/-0.03	0.56	+/-0.02	81.4	+/-4.2
				PROFsec	74.1	+/-1.1	70.3	+/-1.6	2.3	+/-0.4	0.33	+/-0.02	0.71	+/-0.03	0.63	+/-0.03	0.57	+/-0.02	81.4	+/-4.2
				PSIpred	74.3	+/-1.2	71.2	+/-1.8	2.1	+/-0.4	0.40	+/-0.06	0.72	+/-0.03	0.65	+/-0.03	0.59	+/-0.02	87.2	+/-3.6
				SAM-T99sec	74.3	+/-1.1	68.7	+/-1.7	2.0	+/-0.3	0.38	+/-0.06	0.69	+/-0.03	0.63	+/-0.03	0.56	+/-0.02	82.6	+/-4.1
				SSpro2	73.3	+/-1.2	67.7	+/-1.9	2.8	+/-0.4	0.38	+/-0.06	0.74	+/-0.03	0.64	+/-0.03	0.59	+/-0.02	83.7	+/-4.0
common 2	86	dssp	2	PHD	68.2	+/-1.3	64.8	+/-1.6	4.6	+/-0.5	0.26	+/-0.02	0.58	+/-0.03	0.48	+/-0.03	0.47	+/-0.02	79.1	+/-4.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	112	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	1.8	+/-0.3	0.34	+/-0.02	0.68	+/-0.02	0.59	+/-0.03	0.56	+/-0.02	79.5	+/-3.8
				PHDpsi	74.6	+/-0.9	68.4	+/-1.4	2.7	+/-0.3	0.24	+/-0.07	0.67	+/-0.02	0.58	+/-0.03	0.53	+/-0.02	81.2	+/-3.7
				PROF_king	74.3	+/-0.9	68.3	+/-1.5	2.6	+/-0.3	0.32	+/-0.01	0.70	+/-0.02	0.61	+/-0.03	0.56	+/-0.02	83.0	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.71	+/-0.02	0.63	+/-0.02	0.57	+/-0.02	82.1	+/-3.6
				PSIpred	76.2	+/-1.0	71.4	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.72	+/-0.02	0.65	+/-0.03	0.59	+/-0.02	84.8	+/-3.4
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	1.7	+/-0.2	0.35	+/-0.02	0.69	+/-0.02	0.63	+/-0.02	0.56	+/-0.02	83.9	+/-3.5
				SSpro1	75.8	+/-1.0	68.8	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.03	0.57	+/-0.02	80.4	+/-3.8
common 3	112	dssp	2	PHD	71.8	+/-1.0	66.9	+/-1.4	3.6	+/-0.4	0.20	+/-0.07	0.58	+/-0.02	0.48	+/-0.03	0.47	+/-0.01	81.2	+/-3.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.68	+/-0.02	0.59	+/-0.02	0.56	+/-0.02	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	2.6	+/-0.3	0.26	+/-0.07	0.67	+/-0.02	0.58	+/-0.02	0.53	+/-0.01	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	2.1	+/-0.2	0.35	+/-0.01	0.71	+/-0.02	0.63	+/-0.02	0.57	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	2.2	+/-0.3	0.36	+/-0.01	0.72	+/-0.02	0.65	+/-0.03	0.59	+/-0.02	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.69	+/-0.02	0.63	+/-0.02	0.56	+/-0.02	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	3.5	+/-0.3	0.22	+/-0.07	0.58	+/-0.02	0.48	+/-0.03	0.47	+/-0.01	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	2.3	+/-0.2	0.35	+/-0.01	0.71	+/-0.01	0.63	+/-0.02	0.57	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	2.4	+/-0.2	0.36	+/-0.01	0.72	+/-0.02	0.65	+/-0.02	0.59	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.61	+/-0.02	0.57	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	2.3	+/-0.2	0.33	+/-0.01	0.68	+/-0.02	0.59	+/-0.02	0.56	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	3.0	+/-0.3	0.28	+/-0.04	0.67	+/-0.01	0.58	+/-0.02	0.53	+/-0.01	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	4.0	+/-0.3	0.24	+/-0.04	0.58	+/-0.02	0.48	+/-0.02	0.47	+/-0.01	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	465	dssp	1	PROFsec	75.9	+/-0.5	71.7	+/-0.7	2.5	+/-0.2	0.35	+/-0.01	0.71	+/-0.01	0.63	+/-0.01	0.57	+/-0.01	82.6	+/-1.8
				PSIpred	75.8	+/-0.5	71.7	+/-0.7	2.5	+/-0.2	0.37	+/-0.01	0.72	+/-0.01	0.65	+/-0.01	0.59	+/-0.01	84.1	+/-1.7
common 6	465	dssp	2	PHDpsi	73.8	+/-0.5	69.0	+/-0.7	3.0	+/-0.2	0.30	+/-0.02	0.67	+/-0.01	0.58	+/-0.01	0.53	+/-0.01	80.6	+/-1.8
common 6	465	dssp	3	PHD	70.6	+/-0.5	66.6	+/-0.7	4.5	+/-0.3	0.26	+/-0.02	0.58	+/-0.01	0.48	+/-0.01	0.47	+/-0.01	78.1	+/-1.9