EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	385	69	method/index.html

APSSP	60	19	method/apssp.html
JPred	292	61	method/jpred.html
PHD	354	67	method/phd.html
PHDpsi	354	67	method/phdpsi.html
PROF	1	1	method/prof1.html
PROF_king	301	52	method/prof_king.html
PROFsec	329	66	method/profsec.html
PSIpred	344	67	method/psipred.html
PSSP	313	56	method/pssp.html
SAM-T99sec	209	50	method/samt99_sec.html
	1	1	method/sspro.html
SSpro1	275	44	method/sspro1.html
SSpro2	61	20	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 31 proteins and 10 methods (HTML - ASCII)
- set 2: 36 proteins and 8 methods (HTML - ASCII)
- set 3: 110 proteins and 9 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 328 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	31	dssp	1	JPred	72.4	+/-2.3	68.7	+/-4.0	2.6	+/-0.8	0.31	+/-0.03	0.66	+/-0.05	0.58	+/-0.06	0.54	+/-0.04	80.6	+/-7.2
				PHD	70.5	+/-2.2	66.1	+/-2.7	4.9	+/-1.0	0.29	+/-0.03	0.61	+/-0.05	0.52	+/-0.05	0.49	+/-0.03	77.4	+/-7.6
				PHDpsi	72.7	+/-2.0	68.6	+/-2.7	3.8	+/-0.8	0.31	+/-0.03	0.66	+/-0.06	0.57	+/-0.05	0.53	+/-0.03	90.3	+/-5.4
				PROF_king	74.6	+/-1.7	69.1	+/-3.4	2.0	+/-0.5	0.33	+/-0.03	0.67	+/-0.04	0.59	+/-0.05	0.54	+/-0.03	77.4	+/-7.6
				PROFsec	73.8	+/-2.0	71.3	+/-2.7	3.4	+/-0.9	0.32	+/-0.02	0.70	+/-0.06	0.62	+/-0.05	0.56	+/-0.03	87.1	+/-6.1
				PSIpred	75.4	+/-1.8	73.8	+/-3.1	1.7	+/-0.6	0.36	+/-0.03	0.70	+/-0.04	0.64	+/-0.06	0.57	+/-0.04	87.1	+/-6.1
				SAM-T99sec	74.7	+/-1.9	69.4	+/-3.0	2.1	+/-0.5	0.32	+/-0.03	0.68	+/-0.05	0.62	+/-0.05	0.55	+/-0.04	90.3	+/-5.4
				SSpro2	74.6	+/-1.6	67.1	+/-2.9	3.3	+/-0.8	0.33	+/-0.03	0.73	+/-0.05	0.62	+/-0.05	0.59	+/-0.03	83.9	+/-6.7
common 1	31	dssp	2	APSSP	66.8	+/-2.4	58.9	+/-3.6	5.6	+/-0.9	0.21	+/-0.03	0.53	+/-0.05	0.42	+/-0.07	0.46	+/-0.04	83.9	+/-6.7
common 1	31	dssp	3	PSSP	64.2	+/-2.0	58.8	+/-2.7	5.8	+/-0.9	0.19	+/-0.02	0.48	+/-0.05	0.38	+/-0.07	0.38	+/-0.03	64.5	+/-8.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	36	dssp	1	JPred	73.6	+/-2.1	69.2	+/-3.7	2.2	+/-0.7	0.32	+/-0.03	0.66	+/-0.05	0.58	+/-0.06	0.54	+/-0.03	80.6	+/-6.7
				PHDpsi	73.7	+/-1.7	68.9	+/-2.5	3.3	+/-0.8	0.32	+/-0.02	0.66	+/-0.05	0.57	+/-0.05	0.53	+/-0.03	86.1	+/-5.8
				PROF_king	75.4	+/-1.5	69.2	+/-3.1	1.8	+/-0.5	0.34	+/-0.02	0.67	+/-0.04	0.59	+/-0.05	0.54	+/-0.03	77.8	+/-7.0
				PROFsec	74.6	+/-1.7	71.7	+/-2.5	2.9	+/-0.8	0.33	+/-0.02	0.70	+/-0.05	0.62	+/-0.05	0.56	+/-0.02	83.3	+/-6.3
				PSIpred	76.2	+/-1.6	73.6	+/-2.8	1.5	+/-0.5	0.37	+/-0.03	0.70	+/-0.04	0.64	+/-0.05	0.57	+/-0.03	86.1	+/-5.8
				SAM-T99sec	75.7	+/-1.7	70.1	+/-2.7	1.9	+/-0.4	0.33	+/-0.03	0.68	+/-0.04	0.62	+/-0.05	0.55	+/-0.04	88.9	+/-5.3
				SSpro2	75.4	+/-1.4	68.2	+/-2.7	2.9	+/-0.7	0.34	+/-0.02	0.73	+/-0.04	0.62	+/-0.05	0.59	+/-0.03	83.3	+/-6.3
common 2	36	dssp	2	PHD	71.1	+/-2.0	66.5	+/-2.4	4.6	+/-0.9	0.29	+/-0.03	0.61	+/-0.05	0.52	+/-0.05	0.49	+/-0.03	77.8	+/-7.0

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	110	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	1.8	+/-0.3	0.34	+/-0.02	0.66	+/-0.02	0.58	+/-0.03	0.54	+/-0.02	79.1	+/-3.9
				PHDpsi	74.6	+/-0.9	68.2	+/-1.4	2.7	+/-0.3	0.24	+/-0.07	0.66	+/-0.02	0.57	+/-0.03	0.53	+/-0.02	80.9	+/-3.8
				PROF_king	74.3	+/-1.0	68.2	+/-1.5	2.5	+/-0.3	0.32	+/-0.01	0.67	+/-0.02	0.59	+/-0.03	0.54	+/-0.02	82.7	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.02	81.8	+/-3.7
				PSIpred	76.3	+/-1.0	71.3	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.70	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	84.5	+/-3.5
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	1.7	+/-0.2	0.35	+/-0.02	0.68	+/-0.02	0.62	+/-0.02	0.55	+/-0.02	83.6	+/-3.5
				SSpro1	75.8	+/-1.0	68.7	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.03	0.57	+/-0.02	80.0	+/-3.8
common 3	110	dssp	2	PHD	71.8	+/-1.0	66.8	+/-1.4	3.6	+/-0.4	0.20	+/-0.07	0.61	+/-0.02	0.52	+/-0.03	0.49	+/-0.02	80.9	+/-3.8
common 3	110	dssp	3	PSSP	63.6	+/-1.1	57.8	+/-1.3	6.2	+/-0.5	0.19	+/-0.01	0.48	+/-0.02	0.38	+/-0.03	0.38	+/-0.02	74.5	+/-4.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.66	+/-0.02	0.58	+/-0.02	0.54	+/-0.02	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	2.6	+/-0.3	0.26	+/-0.07	0.66	+/-0.02	0.57	+/-0.02	0.53	+/-0.01	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	2.1	+/-0.2	0.35	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	2.2	+/-0.3	0.36	+/-0.01	0.70	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.55	+/-0.02	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	3.5	+/-0.3	0.22	+/-0.07	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	2.3	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.02	0.56	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	2.4	+/-0.2	0.36	+/-0.01	0.70	+/-0.02	0.64	+/-0.02	0.57	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.61	+/-0.02	0.57	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	2.3	+/-0.2	0.33	+/-0.01	0.66	+/-0.02	0.58	+/-0.02	0.54	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	3.0	+/-0.3	0.28	+/-0.04	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	4.0	+/-0.3	0.24	+/-0.04	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	328	dssp	1	PROFsec	76.4	+/-0.5	72.4	+/-0.8	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.01	0.56	+/-0.01	81.7	+/-2.1
				PSIpred	76.3	+/-0.6	71.8	+/-0.9	2.3	+/-0.2	0.37	+/-0.01	0.70	+/-0.01	0.64	+/-0.02	0.57	+/-0.01	83.8	+/-2.0
common 6	328	dssp	2	PHDpsi	74.3	+/-0.6	69.2	+/-0.8	3.1	+/-0.2	0.29	+/-0.03	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	79.9	+/-2.2
common 6	328	dssp	3	PHD	71.6	+/-0.6	67.3	+/-0.8	4.2	+/-0.3	0.26	+/-0.03	0.61	+/-0.01	0.52	+/-0.02	0.49	+/-0.01	76.8	+/-2.3