EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	373	64	method/index.html

APSSP	48	14	method/apssp.html
JPred	281	56	method/jpred.html
PHD	343	63	method/phd.html
PHDpsi	343	63	method/phdpsi.html
PROF	1	1	method/prof1.html
PROF_king	291	48	method/prof_king.html
PROFsec	318	62	method/profsec.html
PSIpred	332	62	method/psipred.html
PSSP	302	52	method/pssp.html
SAM-T99sec	200	46	method/samt99_sec.html
	1	1	method/sspro.html
SSpro1	275	44	method/sspro1.html
SSpro2	51	16	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 24 proteins and 10 methods (HTML - ASCII)
- set 2: 29 proteins and 8 methods (HTML - ASCII)
- set 3: 110 proteins and 9 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 317 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	24	dssp	1	JPred	72.6	+/-2.8	69.0	+/-4.8	1.9	+/-0.8	0.31	+/-0.03	0.66	+/-0.06	0.58	+/-0.07	0.54	+/-0.04	75.0	+/-9.0
				PHD	70.2	+/-2.7	65.2	+/-3.2	4.9	+/-1.2	0.28	+/-0.03	0.61	+/-0.06	0.52	+/-0.07	0.49	+/-0.04	79.2	+/-8.5
				PHDpsi	72.0	+/-2.2	66.8	+/-3.1	3.9	+/-1.0	0.29	+/-0.03	0.66	+/-0.07	0.57	+/-0.06	0.53	+/-0.03	87.5	+/-6.9
				PROF_king	74.2	+/-2.0	68.2	+/-4.1	1.7	+/-0.6	0.32	+/-0.03	0.67	+/-0.05	0.59	+/-0.06	0.54	+/-0.04	79.2	+/-8.5
				PROFsec	73.7	+/-2.4	70.5	+/-3.2	3.0	+/-1.1	0.31	+/-0.03	0.70	+/-0.07	0.62	+/-0.06	0.56	+/-0.03	83.3	+/-7.8
				PSIpred	75.2	+/-1.8	73.4	+/-3.6	1.1	+/-0.3	0.34	+/-0.03	0.70	+/-0.05	0.63	+/-0.07	0.57	+/-0.04	83.3	+/-7.8
				SAM-T99sec	73.7	+/-2.3	69.4	+/-3.3	2.0	+/-0.5	0.28	+/-0.03	0.68	+/-0.06	0.62	+/-0.06	0.54	+/-0.05	87.5	+/-6.9
				SSpro2	73.9	+/-1.8	67.5	+/-3.6	2.9	+/-0.9	0.31	+/-0.03	0.74	+/-0.06	0.62	+/-0.06	0.58	+/-0.04	83.3	+/-7.8
common 1	24	dssp	2	APSSP	66.2	+/-2.8	57.9	+/-4.2	5.2	+/-1.0	0.20	+/-0.04	0.53	+/-0.06	0.39	+/-0.08	0.45	+/-0.05	79.2	+/-8.5
				PSSP	66.3	+/-2.3	59.2	+/-3.4	4.6	+/-0.9	0.20	+/-0.02	0.48	+/-0.05	0.38	+/-0.08	0.38	+/-0.04	62.5	+/-10.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	29	dssp	1	JPred	74.0	+/-2.4	69.5	+/-4.3	1.6	+/-0.7	0.33	+/-0.03	0.66	+/-0.05	0.58	+/-0.06	0.54	+/-0.04	75.9	+/-8.1
				PHD	70.9	+/-2.4	65.8	+/-2.8	4.5	+/-1.0	0.29	+/-0.03	0.61	+/-0.05	0.52	+/-0.06	0.49	+/-0.03	79.3	+/-7.7
				PHDpsi	73.3	+/-1.9	67.5	+/-2.8	3.3	+/-0.9	0.30	+/-0.03	0.66	+/-0.06	0.57	+/-0.06	0.53	+/-0.03	82.8	+/-7.1
				PROF_king	75.3	+/-1.7	68.6	+/-3.6	1.5	+/-0.5	0.33	+/-0.02	0.67	+/-0.04	0.59	+/-0.06	0.54	+/-0.03	79.3	+/-7.7
				PROFsec	74.7	+/-2.0	71.1	+/-2.9	2.5	+/-0.9	0.33	+/-0.02	0.70	+/-0.06	0.62	+/-0.06	0.56	+/-0.03	79.3	+/-7.7
				PSIpred	76.3	+/-1.7	73.2	+/-3.2	1.0	+/-0.3	0.35	+/-0.03	0.70	+/-0.04	0.63	+/-0.06	0.57	+/-0.04	82.8	+/-7.1
				SAM-T99sec	75.1	+/-2.0	70.4	+/-3.0	1.8	+/-0.5	0.30	+/-0.03	0.68	+/-0.05	0.62	+/-0.06	0.54	+/-0.04	86.2	+/-6.5
				SSpro2	75.0	+/-1.6	68.8	+/-3.2	2.5	+/-0.8	0.33	+/-0.03	0.74	+/-0.05	0.62	+/-0.06	0.58	+/-0.03	82.8	+/-7.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	110	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	1.8	+/-0.3	0.34	+/-0.02	0.66	+/-0.02	0.58	+/-0.03	0.54	+/-0.02	79.1	+/-3.9
				PHDpsi	74.6	+/-0.9	68.2	+/-1.4	2.7	+/-0.3	0.24	+/-0.07	0.66	+/-0.02	0.57	+/-0.03	0.53	+/-0.02	80.9	+/-3.8
				PROF_king	74.3	+/-1.0	68.2	+/-1.5	2.5	+/-0.3	0.32	+/-0.01	0.67	+/-0.02	0.59	+/-0.03	0.54	+/-0.02	82.7	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.02	81.8	+/-3.7
				PSIpred	76.3	+/-1.0	71.3	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.70	+/-0.02	0.63	+/-0.03	0.57	+/-0.02	84.5	+/-3.5
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	1.7	+/-0.2	0.35	+/-0.02	0.68	+/-0.02	0.62	+/-0.02	0.54	+/-0.02	83.6	+/-3.5
				SSpro1	75.8	+/-1.0	68.7	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.03	0.57	+/-0.02	80.0	+/-3.8
common 3	110	dssp	2	PHD	71.8	+/-1.0	66.8	+/-1.4	3.6	+/-0.4	0.20	+/-0.07	0.61	+/-0.02	0.52	+/-0.03	0.49	+/-0.02	80.9	+/-3.8
common 3	110	dssp	3	PSSP	63.6	+/-1.1	57.8	+/-1.3	6.2	+/-0.5	0.19	+/-0.01	0.48	+/-0.02	0.38	+/-0.03	0.38	+/-0.02	74.5	+/-4.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.66	+/-0.02	0.58	+/-0.02	0.54	+/-0.02	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	2.6	+/-0.3	0.26	+/-0.07	0.66	+/-0.02	0.57	+/-0.02	0.53	+/-0.01	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	2.1	+/-0.2	0.35	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	2.2	+/-0.3	0.36	+/-0.01	0.70	+/-0.02	0.63	+/-0.03	0.57	+/-0.02	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.54	+/-0.02	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	3.5	+/-0.3	0.22	+/-0.07	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	2.3	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.02	0.56	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	2.4	+/-0.2	0.36	+/-0.01	0.70	+/-0.02	0.63	+/-0.02	0.57	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.61	+/-0.02	0.57	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	2.3	+/-0.2	0.33	+/-0.01	0.66	+/-0.02	0.58	+/-0.02	0.54	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	3.0	+/-0.3	0.28	+/-0.04	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	4.0	+/-0.3	0.24	+/-0.04	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	317	dssp	1	PROFsec	76.5	+/-0.5	72.2	+/-0.8	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.01	0.56	+/-0.01	81.4	+/-2.2
				PSIpred	76.3	+/-0.6	71.9	+/-0.9	2.3	+/-0.2	0.36	+/-0.01	0.70	+/-0.01	0.63	+/-0.02	0.57	+/-0.01	83.3	+/-2.1
common 6	317	dssp	2	PHDpsi	74.4	+/-0.6	69.2	+/-0.8	3.1	+/-0.3	0.29	+/-0.03	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	79.5	+/-2.3
common 6	317	dssp	3	PHD	71.7	+/-0.6	67.4	+/-0.8	4.2	+/-0.3	0.26	+/-0.03	0.61	+/-0.01	0.52	+/-0.02	0.49	+/-0.01	77.0	+/-2.4