EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	357	59	method/index.html

APSSP	34	10	method/apssp.html
JPred	268	51	method/jpred.html
PHD	327	58	method/phd.html
PHDpsi	327	58	method/phdpsi.html
PROF	1	1	method/prof1.html
PROF_king	277	44	method/prof_king.html
PROFsec	302	57	method/profsec.html
PSIpred	316	57	method/psipred.html
PSSP	287	47	method/pssp.html
SAM-T99sec	186	42	method/samt99_sec.html
	1	1	method/sspro.html
SSpro1	275	44	method/sspro1.html
SSpro2	35	11	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 16 proteins and 10 methods (HTML - ASCII)
- set 2: 19 proteins and 8 methods (HTML - ASCII)
- set 3: 110 proteins and 9 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 301 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	16	dssp	1	JPred	71.7	+/-3.4	67.0	+/-5.2	2.4	+/-1.1	0.28	+/-0.04	0.66	+/-0.09	0.58	+/-0.08	0.54	+/-0.05	68.8	+/-12.0
				PHD	71.8	+/-2.5	62.9	+/-3.1	4.1	+/-1.2	0.27	+/-0.03	0.61	+/-0.07	0.52	+/-0.08	0.49	+/-0.04	75.0	+/-11.2
				PHDpsi	71.4	+/-2.5	61.8	+/-3.2	3.6	+/-1.2	0.28	+/-0.03	0.66	+/-0.10	0.57	+/-0.07	0.53	+/-0.04	81.2	+/-10.1
				PROF_king	74.0	+/-2.6	67.0	+/-5.3	2.3	+/-0.9	0.30	+/-0.04	0.68	+/-0.07	0.59	+/-0.08	0.54	+/-0.05	75.0	+/-11.2
				PROFsec	73.0	+/-3.0	68.7	+/-4.0	3.6	+/-1.6	0.30	+/-0.03	0.70	+/-0.10	0.62	+/-0.08	0.56	+/-0.04	87.5	+/-8.5
				PSIpred	73.6	+/-2.2	67.8	+/-4.2	0.9	+/-0.3	0.31	+/-0.03	0.70	+/-0.07	0.64	+/-0.09	0.57	+/-0.06	81.2	+/-10.1
				SAM-T99sec	73.4	+/-2.7	65.3	+/-3.7	2.1	+/-0.7	0.30	+/-0.03	0.68	+/-0.07	0.62	+/-0.08	0.54	+/-0.05	87.5	+/-8.5
				SSpro2	74.3	+/-2.4	67.1	+/-4.0	2.0	+/-0.7	0.31	+/-0.04	0.75	+/-0.07	0.63	+/-0.07	0.59	+/-0.05	81.2	+/-10.1
common 1	16	dssp	2	APSSP	63.1	+/-2.7	49.1	+/-3.6	6.1	+/-1.3	0.14	+/-0.02	0.54	+/-0.08	0.37	+/-0.09	0.45	+/-0.05	75.0	+/-11.2
				PSSP	65.0	+/-2.6	54.1	+/-2.9	4.9	+/-1.2	0.19	+/-0.03	0.48	+/-0.07	0.38	+/-0.09	0.38	+/-0.05	56.2	+/-12.8

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	19	dssp	1	JPred	72.4	+/-3.0	65.6	+/-4.7	2.0	+/-1.0	0.28	+/-0.03	0.66	+/-0.08	0.58	+/-0.08	0.54	+/-0.05	73.7	+/-10.4
				PHD	71.3	+/-2.2	62.5	+/-2.8	4.2	+/-1.1	0.27	+/-0.03	0.61	+/-0.07	0.52	+/-0.08	0.49	+/-0.03	78.9	+/-9.6
				PHDpsi	72.5	+/-2.2	62.1	+/-3.0	3.1	+/-1.0	0.29	+/-0.02	0.66	+/-0.08	0.57	+/-0.07	0.53	+/-0.03	78.9	+/-9.6
				PROF_king	75.0	+/-2.2	66.9	+/-4.7	1.9	+/-0.8	0.32	+/-0.03	0.68	+/-0.06	0.59	+/-0.07	0.54	+/-0.04	73.7	+/-10.4
				PROFsec	73.9	+/-2.6	68.7	+/-3.6	3.1	+/-1.4	0.32	+/-0.02	0.70	+/-0.08	0.62	+/-0.08	0.56	+/-0.03	84.2	+/-8.6
				PSIpred	74.4	+/-2.0	67.8	+/-3.7	0.8	+/-0.3	0.32	+/-0.03	0.70	+/-0.06	0.64	+/-0.08	0.57	+/-0.05	78.9	+/-9.6
				SAM-T99sec	74.1	+/-2.3	65.8	+/-3.3	1.8	+/-0.6	0.30	+/-0.03	0.68	+/-0.06	0.62	+/-0.08	0.54	+/-0.05	84.2	+/-8.6
				SSpro2	74.8	+/-2.1	67.9	+/-3.5	1.7	+/-0.6	0.32	+/-0.03	0.75	+/-0.06	0.63	+/-0.08	0.59	+/-0.04	78.9	+/-9.6

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	110	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	1.8	+/-0.3	0.34	+/-0.02	0.66	+/-0.02	0.58	+/-0.03	0.54	+/-0.02	79.1	+/-3.9
				PHDpsi	74.6	+/-0.9	68.2	+/-1.4	2.7	+/-0.3	0.24	+/-0.07	0.66	+/-0.02	0.57	+/-0.03	0.53	+/-0.02	80.9	+/-3.8
				PROF_king	74.3	+/-1.0	68.2	+/-1.5	2.5	+/-0.3	0.32	+/-0.01	0.68	+/-0.02	0.59	+/-0.03	0.54	+/-0.02	82.7	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.02	81.8	+/-3.7
				PSIpred	76.3	+/-1.0	71.3	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.70	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	84.5	+/-3.5
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	1.7	+/-0.2	0.35	+/-0.02	0.68	+/-0.02	0.62	+/-0.02	0.54	+/-0.02	83.6	+/-3.5
				SSpro1	75.8	+/-1.0	68.7	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.03	0.57	+/-0.02	80.0	+/-3.8
common 3	110	dssp	2	PHD	71.8	+/-1.0	66.8	+/-1.4	3.6	+/-0.4	0.20	+/-0.07	0.61	+/-0.02	0.52	+/-0.03	0.49	+/-0.02	80.9	+/-3.8
common 3	110	dssp	3	PSSP	63.6	+/-1.1	57.8	+/-1.3	6.2	+/-0.5	0.19	+/-0.01	0.48	+/-0.02	0.38	+/-0.03	0.38	+/-0.02	74.5	+/-4.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.66	+/-0.02	0.58	+/-0.02	0.54	+/-0.02	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	2.6	+/-0.3	0.26	+/-0.07	0.66	+/-0.02	0.57	+/-0.02	0.53	+/-0.01	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	2.1	+/-0.2	0.35	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	2.2	+/-0.3	0.36	+/-0.01	0.70	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.54	+/-0.02	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	3.5	+/-0.3	0.22	+/-0.07	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	2.3	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.02	0.56	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	2.4	+/-0.2	0.36	+/-0.01	0.70	+/-0.02	0.64	+/-0.02	0.57	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.61	+/-0.02	0.57	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	2.3	+/-0.2	0.33	+/-0.01	0.66	+/-0.02	0.58	+/-0.02	0.54	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	3.0	+/-0.3	0.28	+/-0.04	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	4.0	+/-0.3	0.24	+/-0.04	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	301	dssp	1	PROFsec	76.4	+/-0.6	72.2	+/-0.8	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.02	0.56	+/-0.01	81.4	+/-2.2
				PSIpred	76.3	+/-0.6	71.7	+/-0.9	2.2	+/-0.2	0.36	+/-0.01	0.70	+/-0.01	0.64	+/-0.02	0.57	+/-0.01	82.7	+/-2.2
common 6	301	dssp	2	PHDpsi	74.3	+/-0.6	68.8	+/-0.8	3.1	+/-0.3	0.29	+/-0.03	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	78.7	+/-2.4
common 6	301	dssp	3	PHD	71.6	+/-0.6	67.2	+/-0.8	4.2	+/-0.3	0.25	+/-0.03	0.61	+/-0.01	0.52	+/-0.02	0.49	+/-0.01	76.4	+/-2.5