EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	311	59	method/index.html

APSSP	31	10	method/apssp.html
JPred	240	51	method/jpred.html
PHD	292	58	method/phd.html
PHDpsi	292	58	method/phdpsi.html
PROF0	195	38	method/prof0.html
PROF	286	56	method/prof1.html
PROF_king	223	43	method/prof_king.html
PSIpred	286	57	method/psipred.html
PSSP	254	47	method/pssp.html
SAM-T99sec	175	42	method/samt99_sec.html
SSpro	245	44	method/sspro.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 14 proteins and 8 methods (HTML - ASCII)
- set 2: 115 proteins and 8 methods (HTML - ASCII)
- set 3: 118 proteins and 7 methods (HTML - ASCII)
- set 4: 203 proteins and 6 methods (HTML - ASCII)
- set 5: 283 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	14	dssp	1	JPred	70.5	+/-3.8	67.9	+/-5.9	2.7	+/-1.3	0.27	+/-0.04	0.66	+/-0.10	0.58	+/-0.09	0.54	+/-0.06	71.4	+/-12.5
				PHD	71.3	+/-2.9	63.7	+/-3.3	4.5	+/-1.3	0.27	+/-0.03	0.61	+/-0.08	0.52	+/-0.08	0.49	+/-0.04	78.6	+/-11.4
				PHDpsi	70.3	+/-2.7	62.1	+/-3.4	4.1	+/-1.3	0.26	+/-0.03	0.66	+/-0.11	0.57	+/-0.08	0.53	+/-0.04	85.7	+/-9.7
				PROF	72.3	+/-3.3	69.4	+/-4.5	3.9	+/-1.8	0.30	+/-0.03	0.70	+/-0.11	0.62	+/-0.08	0.56	+/-0.04	92.9	+/-7.1
				PSIpred	72.7	+/-2.3	67.4	+/-4.9	0.8	+/-0.3	0.30	+/-0.04	0.70	+/-0.08	0.64	+/-0.10	0.57	+/-0.07	85.7	+/-9.7
				SAM-T99sec	71.8	+/-2.8	65.0	+/-4.3	2.2	+/-0.7	0.29	+/-0.04	0.68	+/-0.08	0.62	+/-0.09	0.54	+/-0.06	92.9	+/-7.1
common 1	14	dssp	2	APSSP	62.9	+/-3.0	49.4	+/-4.1	5.8	+/-1.4	0.14	+/-0.03	0.51	+/-0.09	0.33	+/-0.10	0.42	+/-0.06	78.6	+/-11.4
				PSSP	64.0	+/-2.8	53.4	+/-3.3	5.0	+/-1.3	0.19	+/-0.03	0.48	+/-0.08	0.38	+/-0.10	0.37	+/-0.06	64.3	+/-13.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	115	dssp	1	JPred	75.5	+/-0.9	68.9	+/-1.5	1.7	+/-0.2	0.34	+/-0.02	0.66	+/-0.02	0.58	+/-0.03	0.54	+/-0.02	78.3	+/-3.9
				PHDpsi	74.6	+/-0.9	68.8	+/-1.3	2.7	+/-0.3	0.24	+/-0.07	0.66	+/-0.02	0.57	+/-0.03	0.53	+/-0.02	80.0	+/-3.7
				PROF	76.4	+/-0.9	71.8	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.02	82.6	+/-3.5
				PSIpred	76.5	+/-1.0	71.7	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.70	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	83.5	+/-3.5
				SAM-T99sec	76.3	+/-0.9	70.9	+/-1.4	1.6	+/-0.2	0.35	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.54	+/-0.02	81.7	+/-3.6
				SSpro	76.1	+/-1.0	69.2	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	80.0	+/-3.7
common 2	115	dssp	2	PHD	72.1	+/-1.0	67.4	+/-1.4	3.5	+/-0.3	0.21	+/-0.07	0.61	+/-0.02	0.52	+/-0.03	0.49	+/-0.02	80.0	+/-3.7
common 2	115	dssp	3	PSSP	63.6	+/-1.0	57.8	+/-1.2	6.5	+/-0.5	0.19	+/-0.01	0.48	+/-0.02	0.38	+/-0.03	0.37	+/-0.02	72.2	+/-4.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	118	dssp	1	JPred	75.4	+/-0.9	69.0	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.66	+/-0.02	0.58	+/-0.03	0.54	+/-0.02	78.8	+/-3.8
				PHDpsi	74.6	+/-0.9	69.0	+/-1.3	2.7	+/-0.3	0.25	+/-0.07	0.66	+/-0.02	0.57	+/-0.02	0.53	+/-0.02	80.5	+/-3.7
				PROF	76.3	+/-0.9	71.8	+/-1.3	2.1	+/-0.2	0.34	+/-0.01	0.70	+/-0.02	0.62	+/-0.02	0.56	+/-0.02	83.1	+/-3.5
				PSIpred	76.4	+/-0.9	71.8	+/-1.4	2.2	+/-0.3	0.36	+/-0.02	0.70	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	83.9	+/-3.4
				SAM-T99sec	76.2	+/-0.9	70.9	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.54	+/-0.02	82.2	+/-3.5
				SSpro	76.1	+/-1.0	69.3	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	80.5	+/-3.7
common 3	118	dssp	2	PHD	72.1	+/-0.9	67.6	+/-1.3	3.5	+/-0.3	0.21	+/-0.07	0.61	+/-0.02	0.52	+/-0.03	0.49	+/-0.01	80.5	+/-3.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	203	dssp	1	PROF	76.3	+/-0.6	72.1	+/-1.0	2.3	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.02	0.56	+/-0.01	81.3	+/-2.7
				PSIpred	76.2	+/-0.7	71.5	+/-1.1	2.3	+/-0.2	0.36	+/-0.01	0.70	+/-0.02	0.64	+/-0.02	0.57	+/-0.01	80.8	+/-2.8
				SSpro	75.9	+/-0.7	70.3	+/-1.1	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.01	81.8	+/-2.7
common 4	203	dssp	2	JPred	74.6	+/-0.7	69.1	+/-1.1	2.3	+/-0.2	0.33	+/-0.01	0.66	+/-0.02	0.58	+/-0.02	0.54	+/-0.01	76.8	+/-3.0
				PHDpsi	74.4	+/-0.6	69.0	+/-1.0	2.9	+/-0.3	0.28	+/-0.04	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	78.3	+/-2.9
common 4	203	dssp	3	PHD	71.7	+/-0.7	67.2	+/-1.0	4.0	+/-0.3	0.24	+/-0.04	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	77.3	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	283	dssp	1	PROF	76.3	+/-0.6	72.1	+/-0.8	2.5	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.62	+/-0.02	0.56	+/-0.01	82.0	+/-2.3
				PSIpred	76.3	+/-0.6	71.4	+/-1.0	2.2	+/-0.2	0.36	+/-0.01	0.70	+/-0.01	0.64	+/-0.02	0.57	+/-0.01	82.3	+/-2.3
common 5	283	dssp	2	PHDpsi	74.2	+/-0.6	68.6	+/-0.9	3.1	+/-0.3	0.28	+/-0.03	0.66	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	78.4	+/-2.4
common 5	283	dssp	3	PHD	71.7	+/-0.6	67.2	+/-0.9	4.2	+/-0.3	0.25	+/-0.03	0.61	+/-0.01	0.52	+/-0.02	0.49	+/-0.01	76.3	+/-2.5