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EVA summary for category sec (3)

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Local link to information about methods evaluated
All prediction results for category sec (i.e. secondary structure)
Explanations of measures for prediction accuracy

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bup_common/index.html

About secondary structure methods evaluated

method		nprot	nweek	detailed results for method
ALL		253	36
JPRED		192	30	method/jpred.html
PHD		248	36	method/phd.html
PHDpsi		248	36	method/phdpsi.html
PROF		244	34	method/prof.html
PSIpred		245	35	method/psipred.html
PSSP		192	26	method/pssp.html
SAM-T99sec		128	23	method/samt99_sec.html
SSpro		222	32	method/sspro.html

Comparison of secondary structure methods (detail level 3)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:

set 1: 102 proteins and 8 methods
set 2: 0 proteins and 11 methods
set 3: 0 proteins and 9 methods
set 4: 0 proteins and 5 methods

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	102	dssp	1	PROF	76.1	+/-0.9	70.7	+/-1.5	57.2	+/-1.5	74.2	+/-1.5	75.2	+/-1.5	57.4	+/-1.5	74.6	+/-1.5	71.4	+/-1.5	72.7	+/-1.5	70.5	+/-1.5	67.4	+/-1.5	2.5	+/-1.5	0.35	+/-1.49	0.66	+/-1.49	0.62	+/-1.49	0.55	+/-1.49	81.4	+/-1.5	6.6	+/-1.5	4.7	+/-1.5
				PSIpred	77.4	+/-1.0	75.1	+/-1.5	53.5	+/-1.5	76.5	+/-1.5	73.3	+/-1.5	57.6	+/-1.5	75.7	+/-1.5	73.4	+/-1.5	78.7	+/-1.5	66.8	+/-1.5	69.9	+/-1.5	2.4	+/-1.5	0.38	+/-1.49	0.68	+/-1.49	0.60	+/-1.49	0.57	+/-1.49	85.3	+/-1.5	5.1	+/-1.5	4.4	+/-1.5
				SAM-T99sec	76.6	+/-1.0	76.8	+/-1.5	50.4	+/-1.5	72.6	+/-1.5	71.7	+/-1.5	61.8	+/-1.5	74.7	+/-1.5	71.5	+/-1.5	76.7	+/-1.5	65.8	+/-1.5	66.1	+/-1.5	1.9	+/-1.5	0.36	+/-1.49	0.67	+/-1.49	0.63	+/-1.49	0.54	+/-1.49	80.4	+/-1.5	6.2	+/-1.5	5.1	+/-1.5
				SSpro	76.3	+/-1.0	75.4	+/-1.5	49.5	+/-1.5	76.9	+/-1.5	73.3	+/-1.5	59.2	+/-1.5	74.2	+/-1.5	70.4	+/-1.5	77.1	+/-1.5	65.3	+/-1.5	67.1	+/-1.5	2.3	+/-1.5	0.36	+/-1.49	0.69	+/-1.49	0.62	+/-1.49	0.55	+/-1.49	80.4	+/-1.5	6.0	+/-1.5	5.8	+/-1.5
common 1	102	dssp	2	JPRED	75.7	+/-0.9	66.7	+/-1.5	44.8	+/-1.5	81.5	+/-1.5	73.0	+/-1.5	60.9	+/-1.5	69.3	+/-1.5	68.7	+/-1.5	69.7	+/-1.5	62.8	+/-1.5	66.9	+/-1.5	1.8	+/-1.5	0.34	+/-1.49	0.68	+/-1.49	0.60	+/-1.49	0.53	+/-1.49	78.4	+/-1.5	6.4	+/-1.5	5.8	+/-1.5
				PHDpsi	74.9	+/-0.8	70.9	+/-1.5	51.5	+/-1.5	73.0	+/-1.5	70.7	+/-1.5	56.6	+/-1.5	72.7	+/-1.5	69.3	+/-1.5	72.5	+/-1.5	65.6	+/-1.5	64.4	+/-1.5	2.7	+/-1.5	0.24	+/-1.49	0.64	+/-1.49	0.59	+/-1.49	0.52	+/-1.49	81.4	+/-1.5	6.2	+/-1.5	4.9	+/-1.5
common 1	102	dssp	3	PHD	72.3	+/-0.9	69.1	+/-1.5	52.6	+/-1.5	69.5	+/-1.5	69.1	+/-1.5	52.4	+/-1.5	71.7	+/-1.5	67.9	+/-1.5	70.7	+/-1.5	65.4	+/-1.5	63.2	+/-1.5	3.6	+/-1.5	0.21	+/-1.49	0.61	+/-1.49	0.58	+/-1.49	0.49	+/-1.49	76.5	+/-1.5	7.6	+/-1.5	5.8	+/-1.5
common 1	102	dssp	4	PSSP	64.0	+/-1.0	57.5	+/-1.5	48.1	+/-1.5	65.5	+/-1.5	63.4	+/-1.5	43.6	+/-1.5	64.5	+/-1.5	59.0	+/-1.5	59.0	+/-1.5	60.7	+/-1.5	58.3	+/-1.5	6.1	+/-1.5	0.20	+/-1.49	0.48	+/-1.49	0.46	+/-1.49	0.38	+/-1.49	73.5	+/-1.5	9.4	+/-1.5	7.7	+/-1.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES

All results

Last update: Dec 29, 2000
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva
WWW mirrors: ../doc/mirrors.html

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