| METHOD about: | ../../../doc/explain_methods.html#PX_about_pdbblast |
| METHOD url: | PDB-BLAST |
| TYPE : | fr |
| NPROT : | 330 |
| NWEEKS : | 156 |
| NOTE 1 : | here ALL results obtained for PDB-BLAST in month 2002_05 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| fr | 2002_05 | THIS_month:psum | 3.1 | 2.4 | 0.6 | 4.1 | 7.1 | 10.9 | 35.5 | 1 | 15 | 18.5 | 202.3 |
| fr | 2002_05 | 1gry:A | 1.2 | 0 | -5.930094e+00 | -3.836576e-01 | 3.6e+00 | 8.1e+00 | 4.7e+01 | 1 | 6.8e+00 | 8.1e+00 | 221 |
| fr | 2002_05 | 1gs5:A | 2.3 | 2.8 | 6.052827e-01 | 6.982143e-02 | 1.9e+00 | 3.5e+00 | 2.8e+01 | 1 | 1.0e+01 | 1.2e+01 | 258 |
| fr | 2002_05 | 1gsj:A | 3.8 | 3.1 | -7.460860e+00 | 1.119443e+00 | 1.2e+00 | 3.6e+00 | 2.9e+01 | 1 | 1.3e+01 | 1.5e+01 | 250 |
| fr | 2002_05 | 1gt7:A | 2.6 | 2.3 | -9.394909e+00 | -2.401635e-01 | 2.9e+00 | 5.8e+00 | 2.4e+01 | 1 | 7.3e+00 | 1.0e+01 | 274 |
| fr | 2002_05 | 1jni:A | 1.9 | 2.0 | -1.388182e+01 | -9.372207e+00 | 3.1e+00 | 1.7e+01 | 6.9e+01 | 1 | 1.2e+01 | 3.4e+01 | 64 |
| fr | 2002_05 | 1jsx:A | 2.0 | 2.6 | -4.740273e+00 | 9.036639e-01 | 1.0e+00 | 2.1e+00 | 4.4e+01 | 1 | 2.0e+01 | 2.4e+01 | 193 |
| fr | 2002_05 | 1k45:A | 2.4 | 2.0 | -6.479932e+00 | -1.119074e+00 | 6.0e-01 | 2.4e+00 | 5.5e+01 | 1 | 1.5e+01 | 2.0e+01 | 168 |
| fr | 2002_05 | 1ko8:B | 2.3 | 3.5 | -1.908749e+01 | 3.574059e+00 | 6.0e-01 | 2.4e+00 | 1.9e+01 | 1 | 1.7e+01 | 1.7e+01 | 168 |
| fr | 2002_05 | 1kpp:A | 10.9 | 4.6 | -2.149164e+00 | 8.848877e+00 | 3.0e+01 | 3.5e+01 | 7.2e+01 | 1 | 4.5e+01 | 4.7e+01 | 144 |
| fr | 2002_05 | 1ksh:B | 2.1 | 2.6 | -6.472695e+00 | -2.594911e-02 | 1.4e+00 | 2.8e+00 | 6.7e+01 | 1 | 1.8e+01 | 2.2e+01 | 141 |
| fr | 2002_05 | 1kt9:A | 8.1 | 2.6 | -5.927729e+00 | 7.493069e+00 | 3.2e+01 | 3.5e+01 | 4.5e+01 | 1 | 1.8e+01 | 2.3e+01 | 132 |
| fr | 2002_05 | 1ktg:B | 10.2 | 4.1 | -7.951763e+00 | 1.022538e+01 | 2.7e+01 | 3.6e+01 | 5.6e+01 | 1 | 3.8e+01 | 4.6e+01 | 132 |
| fr | 2002_05 | 1kv4:A | 1.0 | 2.0 | -2.443200e+01 | -1.454286e+01 | 2.4e+01 | 3.6e+01 | 6.0e+01 | 1 | 3.3e+01 | 3.8e+01 | 42 |
| fr | 2002_05 | 1l7v:A | 2.0 | 2.6 | -1.200328e+01 | -1.628340e-01 | 3.2e+00 | 5.4e+00 | 1.5e+01 | 1 | 5.1e+00 | 5.8e+00 | 313 |
| fr | 2002_05 | 1ldv:A | 1.2 | 1.6 | -2.036000e+01 | -1.932704e+00 | 7.6e-01 | 2.7e+00 | 1.1e+01 | 1 | 5.3e+00 | 8.3e+00 | 264 |
| fr | 2002_05 | 1li1:B | 1.6 | 1.6 | -1.454286e+01 | -1.791262e+00 | 1.3e+00 | 2.2e+00 | 1.9e+01 | 1 | 6.6e+00 | 8.8e+00 | 227 |
| fr | 2002_05 | 1ll0:B | 1.4 | 2.0 | -2.181429e+01 | -2.135932e+00 | 1.9e+00 | 4.9e+00 | 1.0e+01 | 1 | 6.7e+00 | 7.1e+00 | 267 |
| fr | 2002_05 | 1ll0:E | 1.4 | 2.0 | -2.181155e+01 | -2.088880e+00 | 1.9e+00 | 5.0e+00 | 1.1e+01 | 1 | 6.9e+00 | 7.3e+00 | 262 |
| fr | 2002_05 | 1ll2:A | 1.2 | 2.0 | -2.087623e+01 | -2.051926e+00 | 2.0e+00 | 5.1e+00 | 1.1e+01 | 1 | 6.7e+00 | 7.5e+00 | 255 |
| fr | 2002_05 | 1lu7:A | 2.4 | 2.8 | -9.695109e+00 | 7.877621e-01 | 2.2e+00 | 3.7e+00 | 1.8e+01 | 1 | 9.6e+00 | 1.1e+01 | 272 |
| fr | 2002_05 | THIS_month:psum | 3.1 | 2.4 | 0.6 | 4.1 | 7.1 | 10.9 | 35.5 | 1 | 15 | 18.5 | 202.3 |
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |