| METHOD about: | ../../../doc/explain_methods.html#PX_about_pdbblast |
| METHOD url: | PDB-BLAST |
| TYPE : | fr |
| NPROT : | 330 |
| NWEEKS : | 156 |
| NOTE 1 : | here ALL results obtained for PDB-BLAST in month 2002_03 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| fr | 2002_03 | THIS_month:psum | 6.7 | 2.9 | 22.8 | 16.3 | 29.6 | 34.0 | 55.6 | 1 | 33.3 | 34.9 | 144.6 |
| fr | 2002_03 | 1gk7:A | 2.7 | 2.8 | -1.850909e+01 | 1.991793e+01 | 5.4e+01 | 5.9e+01 | 8.5e+01 | 1 | 5.9e+01 | 5.9e+01 | 39 |
| fr | 2002_03 | 1jo8:A | 5.9 | 4.4 | 4.482468e+01 | 2.723726e+01 | 6.7e+01 | 6.9e+01 | 6.9e+01 | 1 | 6.7e+01 | 6.7e+01 | 58 |
| fr | 2002_03 | 1k11:A | 10.0 | 2.6 | -6.359444e+00 | 1.766834e+01 | 1.6e+00 | 4.8e+00 | 7.7e+01 | 1 | 2.0e+01 | 2.3e+01 | 125 |
| fr | 2002_03 | 1k77:A | 18.7 | 0 | -2.912178e-01 | 1.247862e+01 | 3.5e+01 | 4.4e+01 | 6.0e+01 | 1 | 0.0e+00 | 0.0e+00 | 248 |
| fr | 2002_03 | 1k8h:A | 1.6 | 1.2 | -1.357186e+01 | -4.106738e+00 | 7.5e-01 | 2.3e+00 | 3.4e+01 | 1 | 1.5e+01 | 1.8e+01 | 133 |
| fr | 2002_03 | 1kg0:C | 14.2 | 4.1 | -5.930097e+00 | 1.590564e+01 | 4.5e+01 | 5.9e+01 | 7.6e+01 | 1 | 6.5e+01 | 6.7e+01 | 136 |
| fr | 2002_03 | 1kil:E | 1.9 | 2.8 | -3.214737e+01 | -1.527000e+01 | 4.2e+01 | 4.2e+01 | 4.8e+01 | 1 | 4.0e+01 | 4.2e+01 | 40 |
| fr | 2002_03 | 1kqf:C | 2.0 | 2.6 | -1.645028e+01 | -4.749688e-01 | 4.2e+00 | 6.9e+00 | 1.3e+01 | 1 | 1.0e+01 | 1.2e+01 | 216 |
| fr | 2002_03 | 1ktc:A | 2.9 | 3.3 | 4.895690e+00 | -9.696868e-01 | 4.6e+00 | 5.7e+00 | 1.0e+01 | 1 | 7.7e+00 | 8.0e+00 | 388 |
| fr | 2002_03 | 1kvn:A | 7.2 | 4.2 | 2.046303e+01 | 1.037923e+01 | 3.5e+01 | 4.0e+01 | 7.0e+01 | 1 | 4.2e+01 | 4.4e+01 | 104 |
| fr | 2002_03 | 1kvv:A | 7.2 | 4.4 | 2.138027e+01 | 1.058841e+01 | 3.7e+01 | 4.2e+01 | 7.0e+01 | 1 | 4.1e+01 | 4.4e+01 | 104 |
| fr | 2002_03 | THIS_month:psum | 6.7 | 2.9 | 22.8 | 16.3 | 29.6 | 34.0 | 55.6 | 1 | 33.3 | 34.9 | 144.6 |
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |