| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 548 |
| NWEEKS : | 236 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2002_02 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2004_03_05 | psum | 2.3 | 1.8 | 1.3 | 2.1 | 10.2 | 14.7 | 42.4 | 14.8 | 20.8 | 24.1 | 152.9 |
| fr | 2002_02 | THIS_month:psum | 2.0 | 1.6 | 12.2 | 6.6 | 8.6 | 12.7 | 43.7 | 19.5 | 21.0 | 25.6 | 159.5 |
| fr | 2002_02 | 1g9p:A | 0.1 | 0.7 | -2.655652e+01 | -1.357304e+01 | 2.2e+00 | 1.1e+01 | 5.1e+01 | 33 | 2.7e+01 | 3.6e+01 | 45 |
| fr | 2002_02 | 1i1g:A | 3.4 | 2.3 | -6.941732e+00 | -4.343108e+00 | 0.0e+00 | 0.0e+00 | 4.6e+01 | 0.05 | 1.5e+01 | 2.5e+01 | 140 |
| fr | 2002_02 | 1i2u:A | 1.4 | 0.7 | -3.592941e+01 | -1.388182e+01 | 2.7e+01 | 3.2e+01 | 3.9e+01 | 22 | 2.7e+01 | 3.4e+01 | 44 |
| fr | 2002_02 | 1igq:A | 0.4 | 1.6 | -3.214737e+01 | -1.131111e+01 | 5.6e+00 | 1.7e+01 | 3.5e+01 | 7.3 | 2.0e+01 | 2.4e+01 | 54 |
| fr | 2002_02 | 1itp:A | 1.1 | 2.3 | -1.844544e+01 | -5.137150e+00 | 2.6e+00 | 1.2e+01 | 4.2e+01 | 1.7 | 2.2e+01 | 2.9e+01 | 77 |
| fr | 2002_02 | 1jdm:A | 0.1 | 0.0 | -2.106207e+01 | -1.970323e+01 | 0.0e+00 | 6.5e+00 | 9.4e+01 | 296 | 3.9e+01 | 4.5e+01 | 31 |
| fr | 2002_02 | 1jkz:A | 0.5 | 0.0 | -2.776364e+01 | -1.327826e+01 | 0.0e+00 | 0.0e+00 | 4.8e+01 | 27 | 2.0e+01 | 2.6e+01 | 46 |
| fr | 2002_02 | 1jmu:A | 1.4 | 1.6 | -3.592941e+01 | -1.850909e+01 | 4.2e+01 | 4.5e+01 | 5.2e+01 | 46 | 4.2e+01 | 4.5e+01 | 33 |
| fr | 2002_02 | 1jmu:B | 0.5 | 0.7 | -7.081692e+00 | -7.822613e-01 | 0.0e+00 | 1.6e-01 | 1.4e+01 | 2.4 | 2.8e+00 | 3.3e+00 | 608 |
| fr | 2002_02 | 1jr5:A | 1.4 | 1.2 | -1.045979e+01 | -5.972839e+00 | 4.4e+00 | 8.9e+00 | 6.4e+01 | 0.20 | 2.1e+01 | 2.8e+01 | 90 |
| fr | 2002_02 | 1jrm:A | 0.3 | 1.2 | -1.299574e+01 | -5.872805e+00 | 9.6e-01 | 2.9e+00 | 4.5e+01 | 4.3 | 1.6e+01 | 2.2e+01 | 104 |
| fr | 2002_02 | 1jsb:A | 0.7 | 1.2 | -1.355697e+01 | -7.573176e+00 | 2.9e+00 | 1.3e+01 | 6.4e+01 | 2.0 | 1.9e+01 | 2.6e+01 | 70 |
| fr | 2002_02 | 1jw2:A | 0.9 | 0.7 | -1.075636e+01 | -8.142344e+00 | 4.2e+00 | 9.7e+00 | 7.8e+01 | 8.5 | 2.4e+01 | 3.2e+01 | 72 |
| fr | 2002_02 | 1jw3:A | 0.6 | 2.8 | -2.262222e+01 | -4.362857e+00 | 1.4e+00 | 2.1e+00 | 1.9e+01 | 1.4 | 9.3e+00 | 1.1e+01 | 140 |
| fr | 2002_02 | 1jy1:A | 2.4 | 0 | -1.246528e+01 | 1.770376e-03 | 2.3e-01 | 9.3e-01 | 1.1e+01 | 2.3 | 0.0e+00 | 0.0e+00 | 431 |
| fr | 2002_02 | 1jyg:A | 2.8 | 3.1 | -1.485037e+01 | -6.232860e+00 | 2.5e+01 | 3.3e+01 | 3.6e+01 | 0.90 | 3.3e+01 | 3.3e+01 | 69 |
| fr | 2002_02 | 1k1f:E | 0.5 | 1.2 | -1.827554e+01 | -9.689920e+00 | 4.8e+00 | 1.7e+01 | 5.2e+01 | 4.7 | 1.6e+01 | 1.9e+01 | 63 |
| fr | 2002_02 | 1k28:D | 0.4 | 2.0 | -5.744052e+00 | -1.434841e+00 | 8.6e-01 | 2.0e+00 | 3.0e+01 | 0.12 | 4.3e+00 | 1.3e+01 | 349 |
| fr | 2002_02 | 1k5h:B | 10.6 | 3.5 | 1.521122e+00 | 3.412787e+00 | 2.8e+00 | 4.1e+00 | 2.2e+01 | 0.12 | 1.9e+01 | 2.0e+01 | 391 |
| fr | 2002_02 | 1kbh:A | 0.0 | 1.2 | -2.181429e+01 | -1.299194e+01 | 2.1e+00 | 2.1e+00 | 6.0e+01 | 25 | 2.6e+01 | 3.4e+01 | 47 |
| fr | 2002_02 | 1khc:A | 2.9 | 2.3 | -1.796471e+01 | -5.264347e-01 | 0.0e+00 | 0.0e+00 | 2.5e+01 | 0.79 | 1.4e+01 | 1.9e+01 | 135 |
| fr | 2002_02 | 1khg:A | 10.2 | 4.4 | -8.723305e+00 | -9.278319e-01 | 1.0e+01 | 1.0e+01 | 1.2e+01 | 0.07 | 1.1e+01 | 1.2e+01 | 603 |
| fr | 2002_02 | 1kps:B | 2.5 | 2.0 | -1.174615e+01 | -1.435975e+00 | 6.4e-01 | 5.8e+00 | 3.3e+01 | 14 | 1.2e+01 | 1.7e+01 | 156 |
| fr | 2002_02 | 1kq4:D | 3.2 | 2.8 | -8.197528e+00 | 3.974721e+00 | 2.4e+00 | 6.3e+00 | 2.4e+01 | 2.2 | 1.4e+01 | 1.4e+01 | 206 |
| fr | 2002_02 | 1kqh:A | 4.7 | 3.5 | 2.307826e+01 | 1.910819e+01 | 8.2e+01 | 8.7e+01 | 8.7e+01 | 4.7 | 7.9e+01 | 8.2e+01 | 38 |
| fr | 2002_02 | 1ktz:B | 0.2 | 0.0 | -1.071579e+01 | -5.724852e+00 | 9.4e-01 | 2.8e+00 | 5.4e+01 | 1.2 | 1.5e+01 | 1.7e+01 | 106 |
| fr | 2002_02 | THIS_month:psum | 2.0 | 1.6 | 12.2 | 6.6 | 8.6 | 12.7 | 43.7 | 19.5 | 21.0 | 25.6 | 159.5 |
| fr | 2004_03_05 | psum | 2.3 | 1.8 | 1.3 | 2.1 | 10.2 | 14.7 | 42.4 | 14.8 | 20.8 | 24.1 | 152.9 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |