| METHOD about: | ../../../doc/explain_methods.html#PX_about_pdbblast |
| METHOD url: | PDB-BLAST |
| TYPE : | fr |
| NPROT : | 330 |
| NWEEKS : | 156 |
| NOTE 1 : | here ALL results obtained for PDB-BLAST in month 2002_02 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| fr | 2002_02 | THIS_month:psum | 5.3 | 2.2 | 22.0 | 12.5 | 17.7 | 25.7 | 52.5 | 1 | 26.1 | 28.7 | 216.0 |
| fr | 2002_02 | 1i2v:A | 2.9 | 2.8 | 2.338425e+01 | 1.530423e+01 | 4.8e+01 | 5.9e+01 | 8.4e+01 | 1 | 6.1e+01 | 6.8e+01 | 44 |
| fr | 2002_02 | 1igu:A | 1.0 | 2.0 | -2.036000e+01 | -9.940758e+00 | 1.5e+01 | 2.4e+01 | 5.1e+01 | 1 | 2.4e+01 | 3.1e+01 | 59 |
| fr | 2002_02 | 1jdm:A | 2.7 | 2.6 | -1.597043e+00 | -1.330599e+01 | 5.8e+01 | 7.4e+01 | 9.4e+01 | 1 | 6.8e+01 | 6.8e+01 | 31 |
| fr | 2002_02 | 1jfm:A | 20.8 | 5.0 | 1.891736e+01 | 1.844006e+01 | 7.0e+01 | 8.2e+01 | 9.5e+01 | 1 | 7.7e+01 | 8.2e+01 | 174 |
| fr | 2002_02 | 1jmu:B | 3.0 | 2.3 | -3.191734e+00 | -8.714914e-02 | 1.6e-01 | 4.9e-01 | 2.6e+01 | 1 | 5.1e+00 | 5.8e+00 | 608 |
| fr | 2002_02 | 1jw3:A | 2.0 | 2.3 | 4.564279e+00 | 5.731998e-01 | 7.1e-01 | 3.6e+00 | 4.1e+01 | 1 | 2.0e+01 | 2.1e+01 | 140 |
| fr | 2002_02 | 1k1e:C | 3.2 | 2.3 | -7.217938e+00 | 6.728583e-01 | 3.4e+00 | 5.2e+00 | 4.8e+01 | 1 | 1.4e+01 | 1.7e+01 | 174 |
| fr | 2002_02 | 1k1f:A | 3.1 | 1.2 | 2.845585e+01 | 2.037600e+01 | 6.2e+00 | 2.0e+01 | 5.6e+01 | 1 | 1.9e+01 | 2.3e+01 | 64 |
| fr | 2002_02 | 1k1f:D | 3.1 | 1.2 | 3.013874e+01 | 1.806166e+01 | 3.2e+00 | 1.7e+01 | 5.7e+01 | 1 | 2.1e+01 | 2.4e+01 | 63 |
| fr | 2002_02 | 1k1f:H | 5.2 | 1.2 | 2.700338e+01 | 2.172543e+01 | 6.6e+00 | 2.1e+01 | 5.9e+01 | 1 | 2.1e+01 | 2.3e+01 | 61 |
| fr | 2002_02 | 1khb:A | 1.7 | 3.1 | -7.390808e+00 | -5.962181e-01 | 1.0e-00 | 1.3e+00 | 1.4e+01 | 1 | 4.1e+00 | 4.3e+00 | 603 |
| fr | 2002_02 | 1khe:A | 18.1 | 2.6 | -4.552391e+00 | 5.341790e+00 | 1.8e+01 | 2.0e+01 | 2.3e+01 | 1 | 5.5e+00 | 6.2e+00 | 582 |
| fr | 2002_02 | 1kq4:D | 2.4 | 0 | -4.710856e+00 | -1.313611e+00 | 4.9e-01 | 7.8e+00 | 3.5e+01 | 1 | 0.0e+00 | 0.0e+00 | 206 |
| fr | 2002_02 | THIS_month:psum | 5.3 | 2.2 | 22.0 | 12.5 | 17.7 | 25.7 | 52.5 | 1 | 26.1 | 28.7 | 216.0 |
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |