| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 548 |
| NWEEKS : | 236 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2001_11 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2004_03_05 | psum | 2.3 | 1.8 | 1.3 | 2.1 | 10.2 | 14.7 | 42.4 | 14.8 | 20.8 | 24.1 | 152.9 |
| fr | 2001_11 | THIS_month:psum | 1.9 | 1.9 | 19.8 | 8.0 | 8.5 | 14.1 | 45.5 | 10.4 | 21.0 | 24.7 | 140.3 |
| fr | 2001_11 | 1gl0:I | 0.2 | 0 | -4.072000e+01 | -1.908750e+01 | 0.0e+00 | 3.1e+00 | 4.7e+01 | 107 | 0.0e+00 | 0.0e+00 | 32 |
| fr | 2001_11 | 1gmm:A | 1.8 | 4.4 | -5.221167e+00 | 1.631175e+01 | 4.6e+01 | 5.7e+01 | 8.6e+01 | 0.02 | 6.8e+01 | 7.5e+01 | 126 |
| fr | 2001_11 | 1gmv:A | 0.7 | 2.0 | -1.177210e+01 | -4.226440e+00 | 2.2e+00 | 6.5e+00 | 3.6e+01 | 5.0 | 1.3e+01 | 1.5e+01 | 138 |
| fr | 2001_11 | 1gny:A | 1.0 | 2.0 | -1.246531e+01 | -2.847745e+00 | 0.0e+00 | 0.0e+00 | 3.2e+01 | 1.3 | 9.8e+00 | 1.6e+01 | 153 |
| fr | 2001_11 | 1hcx:A | 0.5 | 1.6 | -2.545000e+01 | -4.734877e+00 | 0.0e+00 | 0.0e+00 | 1.9e+01 | 7.0 | 8.7e+00 | 1.0e+01 | 127 |
| fr | 2001_11 | 1hdl:A | 0.8 | 2.0 | -1.461412e+01 | -9.801625e+00 | 1.5e+01 | 3.1e+01 | 7.5e+01 | 3.9 | 3.5e+01 | 4.0e+01 | 55 |
| fr | 2001_11 | 1hek:A | 0.9 | 2.0 | -1.110507e+01 | -4.374539e+00 | 3.5e+00 | 8.8e+00 | 4.9e+01 | 5.7 | 1.8e+01 | 2.4e+01 | 113 |
| fr | 2001_11 | 1hz4:A | 1.1 | 1.6 | -5.272131e+00 | 9.784493e-02 | 2.7e-01 | 8.2e-01 | 1.9e+01 | 10 | 7.7e+00 | 9.3e+00 | 366 |
| fr | 2001_11 | 1i26:A | 0.0 | 0 | -2.908571e+01 | -1.796471e+01 | 0.0e+00 | 8.8e+00 | 6.2e+01 | 13 | 0.0e+00 | 0.0e+00 | 34 |
| fr | 2001_11 | 1jfa:A | 0.5 | 1.6 | -9.396903e+00 | -1.389113e+00 | 5.6e-01 | 1.4e+00 | 1.8e+01 | 3.8 | 5.4e+00 | 6.2e+00 | 354 |
| fr | 2001_11 | 1jo6:A | 0.1 | 0.7 | -2.545000e+01 | -1.357333e+01 | 0.0e+00 | 4.4e+00 | 5.3e+01 | 40 | 2.9e+01 | 3.8e+01 | 45 |
| fr | 2001_11 | 1jrj:A | 3.0 | 3.3 | -1.415730e+01 | 1.427323e+01 | 1.0e+01 | 4.1e+01 | 7.9e+01 | 15 | 5.6e+01 | 6.2e+01 | 39 |
| fr | 2001_11 | 1jwa:B | 4.3 | 0.7 | -1.442048e+01 | 4.562583e-02 | 7.8e+00 | 1.2e+01 | 1.6e+01 | 0.10 | 6.5e+00 | 7.8e+00 | 217 |
| fr | 2001_11 | 1jwy:B | 1.4 | 2.3 | -3.263068e+00 | 4.712554e+00 | 1.3e+01 | 2.3e+01 | 6.0e+01 | 0.00 | 2.9e+01 | 3.6e+01 | 281 |
| fr | 2001_11 | 1jyo:A | 2.5 | 2.6 | -1.018000e+01 | -3.218479e+00 | 0.0e+00 | 2.3e+00 | 4.6e+01 | 13 | 1.2e+01 | 2.0e+01 | 130 |
| fr | 2001_11 | 1jyo:E | 0.4 | 1.2 | -1.420465e+01 | -5.987974e+00 | 0.0e+00 | 2.9e+00 | 4.2e+01 | 8.4 | 1.6e+01 | 2.0e+01 | 102 |
| fr | 2001_11 | 1jzw:A | 7.3 | 3.7 | -1.153834e+01 | 9.523026e+00 | 2.7e+01 | 3.1e+01 | 3.7e+01 | 0.01 | 3.3e+01 | 3.4e+01 | 137 |
| fr | 2001_11 | 1k3e:A | 0.1 | 0 | -2.545000e+01 | -4.331915e+00 | 0.0e+00 | 0.0e+00 | 1.7e+01 | 2.2 | 0.0e+00 | 0.0e+00 | 141 |
| fr | 2001_11 | 1k3s:A | 0.9 | 1.2 | -1.001311e+01 | -1.202510e+00 | 2.8e+00 | 3.8e+00 | 5.8e+01 | 2.0 | 1.2e+01 | 1.9e+01 | 106 |
| fr | 2001_11 | 1k5j:A | 2.3 | 1.6 | -1.650811e+01 | -5.003988e+00 | 3.2e+00 | 6.4e+00 | 3.9e+01 | 0.69 | 1.8e+01 | 1.9e+01 | 94 |
| fr | 2001_11 | 1k99:A | 10.5 | 4.9 | 1.982900e+01 | 1.687753e+01 | 6.2e+01 | 7.5e+01 | 8.5e+01 | 1e-16 | 7.1e+01 | 7.4e+01 | 91 |
| fr | 2001_11 | 1kaf:A | 1.2 | 1.6 | -1.035254e+01 | -3.328069e+00 | 1.9e+00 | 1.9e+00 | 5.5e+01 | 0.90 | 2.2e+01 | 2.8e+01 | 108 |
| fr | 2001_11 | 1kcf:A | 3.5 | 3.7 | -1.071540e+01 | 2.413858e+00 | 2.1e+00 | 4.6e+00 | 1.7e+01 | 0.39 | 1.3e+01 | 1.5e+01 | 240 |
| fr | 2001_11 | THIS_month:psum | 1.9 | 1.9 | 19.8 | 8.0 | 8.5 | 14.1 | 45.5 | 10.4 | 21.0 | 24.7 | 140.3 |
| fr | 2004_03_05 | psum | 2.3 | 1.8 | 1.3 | 2.1 | 10.2 | 14.7 | 42.4 | 14.8 | 20.8 | 24.1 | 152.9 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |