| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 548 |
| NWEEKS : | 236 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2001_05 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2004_03_05 | psum | 3.1 | 2.3 | 2.3 | 3.0 | 14.5 | 19.5 | 48.4 | 14.8 | 25.4 | 28.9 | 152.9 |
| fr | 2001_05 | THIS_month:psum | 3.9 | 2.4 | 18.3 | 5.0 | 12.1 | 16.6 | 46.7 | 13.5 | 21.7 | 24.8 | 182.8 |
| fr | 2001_05 | 1ews:A | 1.3 | 1.6 | -3.214737e+01 | -1.908750e+01 | 1.9e+01 | 2.2e+01 | 5.9e+01 | 20 | 4.4e+01 | 4.7e+01 | 32 |
| fr | 2001_05 | 1f08:A | 1.5 | 2.3 | -9.695238e+00 | -2.938790e+00 | 1.4e+00 | 2.7e+00 | 4.3e+01 | 2.2 | 1.5e+01 | 1.8e+01 | 148 |
| fr | 2001_05 | 1fwo:A | 0.9 | 1.6 | -3.054000e+01 | -1.745143e+01 | 2.6e+01 | 3.7e+01 | 5.7e+01 | 221 | 3.4e+01 | 4.0e+01 | 35 |
| fr | 2001_05 | 1g4y:B | 0.5 | 2.0 | -2.349231e+01 | -7.100075e+00 | 3.7e+00 | 8.6e+00 | 3.2e+01 | 3.2 | 2.0e+01 | 2.2e+01 | 81 |
| fr | 2001_05 | 1g5v:A | 1.3 | 2.0 | -1.090714e+01 | -6.175235e+00 | 1.8e+01 | 3.4e+01 | 1.0e+02 | 0.30 | 2.7e+01 | 2.9e+01 | 56 |
| fr | 2001_05 | 1g8f:A | 12.5 | 3.3 | -6.084892e-01 | 2.981060e+00 | 1.2e+01 | 1.5e+01 | 2.3e+01 | 2e-31 | 1.5e+01 | 1.6e+01 | 510 |
| fr | 2001_05 | 1g8l:A | 14.7 | 5.3 | -5.030406e+00 | 5.810766e+00 | 1.9e+01 | 2.3e+01 | 3.0e+01 | 2e-16 | 2.3e+01 | 2.6e+01 | 403 |
| fr | 2001_05 | 1hf2:A | 2.5 | 1.6 | -1.328768e+00 | -1.517167e+00 | 4.1e+00 | 6.1e+00 | 8.0e+01 | 2.2 | 1.9e+01 | 2.9e+01 | 196 |
| fr | 2001_05 | 1hf9:A | 1.3 | 2.6 | -1.586051e+01 | -6.154374e+00 | 1.2e+01 | 1.7e+01 | 8.3e+01 | 3.8 | 3.9e+01 | 4.4e+01 | 41 |
| fr | 2001_05 | 1huf:A | 1.5 | 2.8 | -9.364086e+00 | 5.050836e-01 | 3.3e+00 | 8.1e+00 | 5.1e+01 | 1.3 | 2.1e+01 | 2.4e+01 | 123 |
| fr | 2001_05 | 1hyn:Q | 3.6 | 2.8 | -5.397480e+00 | -7.336400e-01 | 9.9e-01 | 2.6e+00 | 3.2e+01 | 0.94 | 7.9e+00 | 9.9e+00 | 302 |
| fr | 2001_05 | 1i4t:A | 2.1 | 3.3 | -1.745131e+01 | 3.570040e-01 | 4.4e+00 | 7.2e+00 | 1.9e+01 | 8.6 | 1.3e+01 | 1.6e+01 | 180 |
| fr | 2001_05 | 1i7f:A | 4.3 | 2.3 | -8.851647e+00 | -1.952055e+00 | 4.5e-01 | 9.0e-01 | 3.1e+01 | 1.8 | 1.1e+01 | 1.3e+01 | 223 |
| fr | 2001_05 | 1i7w:B | 0.5 | 0 | -2.776364e+01 | -1.272500e+01 | 1.9e+01 | 2.1e+01 | 4.6e+01 | 2.7 | 0.0e+00 | 0.0e+00 | 48 |
| fr | 2001_05 | 1i9b:A | 1.0 | 0.0 | -1.527000e+01 | -2.524376e+00 | 0.0e+00 | 1.5e+00 | 2.0e+01 | 12 | 1.1e+01 | 1.2e+01 | 205 |
| fr | 2001_05 | 1i9y:A | 1.8 | 1.2 | -6.169697e+00 | -1.341898e+00 | 3.6e+00 | 4.2e+00 | 2.9e+01 | 10.0 | 6.0e+00 | 8.3e+00 | 336 |
| fr | 2001_05 | 1ib3:A | 3.1 | 3.3 | -8.725714e+00 | 7.088388e-03 | 2.7e+00 | 4.8e+00 | 2.1e+01 | 0.20 | 9.3e+00 | 1.2e+01 | 335 |
| fr | 2001_05 | 1ifq:A | 1.6 | 1.6 | -1.261745e+01 | -4.820317e+00 | 8.1e-01 | 4.0e+00 | 3.8e+01 | 18 | 9.7e+00 | 1.2e+01 | 124 |
| fr | 2001_05 | 1ihn:A | 1.6 | 1.6 | -9.543750e+00 | -4.363927e+00 | 1.4e+01 | 1.5e+01 | 5.8e+01 | 0.62 | 1.8e+01 | 2.3e+01 | 111 |
| fr | 2001_05 | 1iho:A | 2.7 | 2.8 | 3.168345e+01 | 1.287463e+00 | 8.2e+00 | 8.2e+00 | 2.0e+01 | 0.16 | 9.2e+00 | 1.3e+01 | 282 |
| fr | 2001_05 | 1ija:A | 1.8 | 2.6 | -1.130977e+01 | -3.527242e+00 | 4.7e+00 | 8.8e+00 | 3.6e+01 | 1.5 | 1.6e+01 | 2.0e+01 | 148 |
| fr | 2001_05 | 1in1:A | 8.1 | 3.3 | -8.852174e+00 | 1.057791e+01 | 3.6e+01 | 5.7e+01 | 7.8e+01 | 0.04 | 5.5e+01 | 5.8e+01 | 88 |
| fr | 2001_05 | 1j77:A | 21.3 | 6.3 | 5.035012e+00 | 1.854743e+01 | 6.7e+01 | 7.5e+01 | 9.0e+01 | 1e-51 | 7.7e+01 | 7.9e+01 | 199 |
| fr | 2001_05 | THIS_month:psum | 3.9 | 2.4 | 18.3 | 5.0 | 12.1 | 16.6 | 46.7 | 13.5 | 21.7 | 24.8 | 182.8 |
| fr | 2004_03_05 | psum | 3.1 | 2.3 | 2.3 | 3.0 | 14.5 | 19.5 | 48.4 | 14.8 | 25.4 | 28.9 | 152.9 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |