| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 548 |
| NWEEKS : | 236 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2000_11 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2004_03_05 | psum | 3.1 | 2.3 | 2.3 | 3.0 | 14.5 | 19.5 | 48.4 | 14.8 | 25.4 | 28.9 | 152.9 |
| fr | 2000_11 | THIS_month:psum | 3.5 | 2.7 | 22.7 | 15.5 | 29.0 | 35.0 | 64.4 | 10.7 | 39.3 | 43.7 | 107.7 |
| fr | 2000_11 | 1by6:A | 0.2 | 0.0 | -2.776364e+01 | -1.696667e+01 | 8.3e+00 | 1.1e+01 | 6.1e+01 | 12 | 3.3e+01 | 4.4e+01 | 36 |
| fr | 2000_11 | 1dd3:C | 2.3 | 2.8 | 3.845966e+01 | -1.175121e+01 | 6.2e+01 | 6.6e+01 | 1.0e+02 | 14 | 6.6e+01 | 6.6e+01 | 32 |
| fr | 2000_11 | 1dh3:A | 7.8 | 5.0 | -1.197647e+01 | 3.987856e+01 | 9.3e+01 | 9.3e+01 | 9.3e+01 | 0.00 | 9.3e+01 | 9.3e+01 | 55 |
| fr | 2000_11 | 1dpu:A | 7.8 | 3.7 | -1.197647e+01 | 1.845326e+01 | 6.4e+01 | 6.7e+01 | 7.4e+01 | 3e-04 | 7.0e+01 | 7.0e+01 | 69 |
| fr | 2000_11 | 1e0f:J | 0.6 | 2.0 | -1.566154e+01 | -1.106372e+01 | 1.6e+01 | 2.0e+01 | 7.1e+01 | 1.8 | 2.2e+01 | 2.5e+01 | 55 |
| fr | 2000_11 | 1e79:I | 1.9 | 2.3 | -2.655652e+01 | -1.242651e+01 | 2.8e+01 | 3.6e+01 | 4.9e+01 | 48 | 4.0e+01 | 4.0e+01 | 47 |
| fr | 2000_11 | 1ehx:A | 0.7 | 1.2 | -9.046844e+00 | -5.627524e+00 | 4.3e+00 | 1.1e+01 | 6.5e+01 | 0.76 | 2.1e+01 | 3.5e+01 | 94 |
| fr | 2000_11 | 1eij:A | 1.4 | 1.6 | -1.069270e+01 | -7.582117e+00 | 2.8e+00 | 6.9e+00 | 7.9e+01 | 1.0 | 2.2e+01 | 2.6e+01 | 72 |
| fr | 2000_11 | 1ev0:A | 3.0 | 3.1 | -1.357333e+01 | 4.403032e+00 | 3.3e+01 | 3.6e+01 | 7.8e+01 | 17 | 3.4e+01 | 4.1e+01 | 58 |
| fr | 2000_11 | 1f6v:A | 2.2 | 2.0 | -8.035955e+00 | -4.905097e+00 | 5.5e+00 | 1.2e+01 | 8.2e+01 | 3.3 | 1.9e+01 | 2.6e+01 | 91 |
| fr | 2000_11 | 1fc3:A | 4.7 | 3.1 | -9.851613e+00 | 1.629453e+00 | 5.0e+00 | 1.3e+01 | 5.2e+01 | 1.3 | 2.9e+01 | 3.0e+01 | 119 |
| fr | 2000_11 | 1fd4:A | 5.0 | 3.9 | 2.326969e+01 | 1.986440e+01 | 7.1e+01 | 8.5e+01 | 8.5e+01 | 0.65 | 6.8e+01 | 7.8e+01 | 41 |
| fr | 2000_11 | 1fmh:A | 3.5 | 3.7 | 4.888457e+01 | 4.000032e+01 | 8.7e+01 | 8.7e+01 | 8.7e+01 | 17 | 8.7e+01 | 8.7e+01 | 31 |
| fr | 2000_11 | 1fmh:B | 3.1 | 3.3 | 1.863082e+00 | 3.530063e+01 | 6.8e+01 | 8.1e+01 | 8.1e+01 | 7.6 | 8.1e+01 | 8.1e+01 | 31 |
| fr | 2000_11 | 1fp3:A | 3.9 | 3.1 | 1.706372e+01 | 1.298748e+00 | 2.2e+00 | 4.0e+00 | 1.3e+01 | 5.0 | 6.7e+00 | 7.5e+00 | 402 |
| fr | 2000_11 | 1fsi:A | 1.9 | 2.0 | -1.034689e+01 | 6.599068e-01 | 5.6e-01 | 1.1e+00 | 3.3e+01 | 1.3 | 1.2e+01 | 1.6e+01 | 179 |
| fr | 2000_11 | 1fva:A | 1.1 | 2.8 | -1.130969e+01 | -1.021723e+00 | 0.0e+00 | 1.0e+00 | 2.7e+01 | 0.33 | 7.5e+00 | 1.2e+01 | 200 |
| fr | 2000_11 | 1fy7:A | 2.7 | 2.8 | -1.650811e+01 | -1.772406e+00 | 8.4e+00 | 8.4e+00 | 1.4e+01 | 3.6 | 8.4e+00 | 8.4e+00 | 273 |
| fr | 2000_11 | 1fyw:A | 3.8 | 2.6 | -8.036842e+00 | -2.040200e+00 | 1.1e+01 | 1.9e+01 | 5.4e+01 | 2.3 | 1.8e+01 | 2.9e+01 | 142 |
| fr | 2000_11 | 1g1p:A | 1.0 | 1.2 | -3.054000e+01 | -1.970323e+01 | 1.9e+01 | 3.9e+01 | 6.5e+01 | 124 | 3.5e+01 | 4.5e+01 | 31 |
| fr | 2000_11 | 1g26:A | 4.1 | 3.3 | 7.198722e+00 | 6.966504e+00 | 8.7e+01 | 9.4e+01 | 9.7e+01 | 1.6 | 8.7e+01 | 9.4e+01 | 31 |
| fr | 2000_11 | 1g5r:A | 8.7 | 3.5 | -4.709832e+00 | 5.974311e+00 | 1.8e+01 | 1.9e+01 | 8.3e+01 | 3.9 | 1.8e+01 | 2.5e+01 | 152 |
| fr | 2000_11 | 1g62:A | 0.7 | 1.6 | -1.628623e+01 | -2.325702e+00 | 1.3e+00 | 2.2e+00 | 1.6e+01 | 1.6 | 8.0e+00 | 1.0e+01 | 224 |
| fr | 2000_11 | 1g7d:A | 3.8 | 3.3 | -8.254054e+00 | -1.156091e+00 | 2.8e+00 | 1.7e+01 | 7.0e+01 | 0.22 | 2.9e+01 | 3.2e+01 | 106 |
| fr | 2000_11 | 1g7e:A | 13.3 | 4.4 | -6.129495e+00 | 1.228553e+01 | 2.7e+01 | 4.7e+01 | 8.1e+01 | 0.00 | 6.8e+01 | 7.4e+01 | 122 |
| fr | 2000_11 | THIS_month:psum | 3.5 | 2.7 | 22.7 | 15.5 | 29.0 | 35.0 | 64.4 | 10.7 | 39.3 | 43.7 | 107.7 |
| fr | 2004_03_05 | psum | 3.1 | 2.3 | 2.3 | 3.0 | 14.5 | 19.5 | 48.4 | 14.8 | 25.4 | 28.9 | 152.9 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |