| METHOD about: | ../../../doc/explain_methods.html#PX_about_pdbblast |
| METHOD url: | PDB-BLAST |
| TYPE : | fr |
| NPROT : | 330 |
| NWEEKS : | 156 |
| NOTE 1 : | here ALL results obtained for PDB-BLAST in month 2000_11 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| fr | 2000_11 | THIS_month:psum | 4.7 | 2.7 | 24.4 | 12.7 | 24.0 | 30.6 | 55.7 | 1 | 31.3 | 34.2 | 151.1 |
| fr | 2000_11 | 1dd4:C | 2.2 | 2.6 | 2.170027e+00 | -7.412639e+00 | 4.0e+01 | 5.1e+01 | 9.1e+01 | 1 | 5.4e+01 | 5.7e+01 | 35 |
| fr | 2000_11 | 1dfc:B | 11.1 | 1.6 | -4.558209e+00 | 3.485592e+00 | 4.6e+00 | 8.0e+00 | 2.8e+01 | 1 | 4.0e+00 | 5.1e+00 | 474 |
| fr | 2000_11 | 1e0f:J | 2.3 | 2.0 | -1.748731e+01 | -1.062279e+01 | 1.5e+01 | 2.9e+01 | 5.8e+01 | 1 | 2.2e+01 | 2.9e+01 | 55 |
| fr | 2000_11 | 1e5k:A | 1.5 | 2.6 | -1.059154e+01 | -6.500462e-01 | 4.8e+00 | 8.0e+00 | 3.0e+01 | 1 | 1.9e+01 | 2.1e+01 | 188 |
| fr | 2000_11 | 1e79:H | 13.2 | 5.7 | -5.514479e+00 | 2.317034e+01 | 6.2e+01 | 6.9e+01 | 8.0e+01 | 1 | 8.0e+01 | 8.0e+01 | 131 |
| fr | 2000_11 | 1f5m:A | 1.3 | 1.6 | -1.272499e+01 | -2.733069e+00 | 5.7e-01 | 2.8e+00 | 2.7e+01 | 1 | 1.2e+01 | 1.5e+01 | 176 |
| fr | 2000_11 | 1fc3:B | 4.8 | 3.5 | -1.110545e+01 | 3.369850e+00 | 5.0e+00 | 9.9e+00 | 5.4e+01 | 1 | 3.1e+01 | 3.1e+01 | 101 |
| fr | 2000_11 | 1fd3:A | 5.0 | 3.7 | 2.161792e+01 | 1.845433e+01 | 7.1e+01 | 8.5e+01 | 8.5e+01 | 1 | 7.3e+01 | 8.0e+01 | 41 |
| fr | 2000_11 | 1ff9:A | 3.6 | 1.2 | -4.676873e+00 | 1.038077e+00 | 4.5e-01 | 1.1e+00 | 2.6e+01 | 1 | 5.1e+00 | 6.5e+00 | 447 |
| fr | 2000_11 | 1fmh:A | 3.7 | 3.9 | 4.965979e+01 | 4.520037e+01 | 9.0e+01 | 9.0e+01 | 9.0e+01 | 1 | 9.0e+01 | 9.0e+01 | 31 |
| fr | 2000_11 | 1fo1:B | 8.0 | 3.7 | -9.116418e+00 | 6.653731e+00 | 2.1e+01 | 3.1e+01 | 4.1e+01 | 1 | 2.6e+01 | 3.0e+01 | 163 |
| fr | 2000_11 | 1fs1:A | 2.4 | 2.3 | -1.527000e+01 | -1.471837e+01 | 3.2e+01 | 4.4e+01 | 9.8e+01 | 1 | 4.4e+01 | 5.1e+01 | 41 |
| fr | 2000_11 | 1fsi:B | 1.9 | 2.0 | -1.003014e+01 | -1.646644e+00 | 2.9e+00 | 4.7e+00 | 3.5e+01 | 1 | 7.6e+00 | 1.4e+01 | 170 |
| fr | 2000_11 | 1fuk:A | 11.3 | 4.9 | -8.144000e+00 | 1.275357e+01 | 3.8e+01 | 3.9e+01 | 4.8e+01 | 1 | 4.3e+01 | 4.5e+01 | 157 |
| fr | 2000_11 | 1fyv:A | 1.0 | 2.0 | -1.152453e+01 | -3.733177e+00 | 1.3e+00 | 6.3e+00 | 3.3e+01 | 1 | 1.1e+01 | 1.3e+01 | 159 |
| fr | 2000_11 | 1g5t:A | 4.5 | 2.6 | -1.019206e+01 | -7.299825e-01 | 3.8e+00 | 6.4e+00 | 3.4e+01 | 1 | 1.2e+01 | 1.5e+01 | 157 |
| fr | 2000_11 | 1qoj:A | 2.1 | 0 | -1.566154e+01 | 2.327689e-01 | 1.6e+01 | 3.6e+01 | 8.9e+01 | 1 | 0.0e+00 | 0.0e+00 | 44 |
| fr | 2000_11 | THIS_month:psum | 4.7 | 2.7 | 24.4 | 12.7 | 24.0 | 30.6 | 55.7 | 1 | 31.3 | 34.2 | 151.1 |
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |