| METHOD about: | ../../../doc/explain_methods.html#PX_about_psiblast |
| METHOD url: | PSI-BLAST |
| TYPE : | fr |
| NPROT : | 548 |
| NWEEKS : | 236 |
| NOTE 1 : | here ALL results obtained for PSI-BLAST in month 2000_09 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2004_03_05 | psum | 2.3 | 1.8 | 1.3 | 2.1 | 10.2 | 14.7 | 42.4 | 14.8 | 20.8 | 24.1 | 152.9 |
| fr | 2000_09 | THIS_month:psum | 2.7 | 1.7 | 6.2 | 7.6 | 8.1 | 12.9 | 42.7 | 17.2 | 18.3 | 21.9 | 131.8 |
| fr | 2000_09 | 1d1h:A | 0.8 | 0 | -4.362857e+01 | -1.745143e+01 | 1.1e+01 | 1.1e+01 | 4.0e+01 | 188 | 0.0e+00 | 0.0e+00 | 35 |
| fr | 2000_09 | 1d2o:A | 0.5 | 1.2 | -8.036842e+00 | -2.558353e+00 | 1.6e+00 | 3.2e+00 | 4.1e+01 | 1.0 | 1.1e+01 | 1.4e+01 | 187 |
| fr | 2000_09 | 1dl0:A | 0.4 | 1.2 | -1.970252e+01 | -1.650811e+01 | 8.1e+00 | 1.4e+01 | 8.4e+01 | 26 | 2.7e+01 | 4.3e+01 | 37 |
| fr | 2000_09 | 1dly:A | 1.5 | 2.0 | 7.392099e+00 | 6.161051e-01 | 0.0e+00 | 8.3e-01 | 8.8e+01 | 0.41 | 2.2e+01 | 2.7e+01 | 121 |
| fr | 2000_09 | 1dqc:A | 1.0 | 0 | -4.072000e+01 | -8.367123e+00 | 0.0e+00 | 5.5e+00 | 2.1e+01 | 11 | 0.0e+00 | 0.0e+00 | 73 |
| fr | 2000_09 | 1eke:A | 1.6 | 1.2 | -7.101156e+00 | -5.737070e-01 | 0.0e+00 | 1.8e+00 | 3.9e+01 | 2.4 | 1.2e+01 | 1.6e+01 | 219 |
| fr | 2000_09 | 1ekr:A | 0.5 | 2.3 | -1.744397e+01 | -3.354562e+00 | 2.1e+00 | 7.0e+00 | 2.4e+01 | 17 | 1.3e+01 | 1.3e+01 | 143 |
| fr | 2000_09 | 1eo6:A | 0.4 | 0.7 | -1.908730e+01 | -5.126572e+00 | 8.6e-01 | 3.4e+00 | 2.8e+01 | 4.2 | 1.1e+01 | 1.4e+01 | 116 |
| fr | 2000_09 | 1esm:D | 18.2 | 4.4 | -5.007491e-01 | 9.554956e+00 | 1.2e+01 | 2.8e+01 | 6.8e+01 | 2e-20 | 5.0e+01 | 5.5e+01 | 297 |
| fr | 2000_09 | 1evs:A | 17.0 | 4.7 | 5.128862e+00 | 1.832803e+01 | 4.5e+01 | 6.7e+01 | 8.7e+01 | 5.5 | 7.5e+01 | 8.0e+01 | 163 |
| fr | 2000_09 | 1ezj:A | 1.5 | 2.3 | -2.126627e+00 | -5.429783e-01 | 8.8e-01 | 8.8e-01 | 8.1e+01 | 0.02 | 3.0e+01 | 3.6e+01 | 114 |
| fr | 2000_09 | 1f93:E | -0.0 | 0.7 | -3.817500e+01 | -1.970323e+01 | 2.9e+01 | 4.2e+01 | 5.2e+01 | 53 | 3.2e+01 | 4.2e+01 | 31 |
| fr | 2000_09 | 1few:A | 0.4 | 1.2 | -2.181429e+01 | -3.090474e+00 | 5.8e-01 | 2.9e+00 | 1.6e+01 | 2.3 | 7.5e+00 | 9.8e+00 | 173 |
| fr | 2000_09 | 1fjf:B | 3.8 | 3.1 | -1.696362e+01 | -8.809654e-01 | 2.6e+00 | 4.3e+00 | 1.5e+01 | 37 | 1.1e+01 | 1.3e+01 | 234 |
| fr | 2000_09 | 1fjf:C | 0.6 | 2.3 | -6.589864e+00 | -1.687709e+00 | 4.9e-01 | 2.9e+00 | 3.4e+01 | 0.46 | 1.2e+01 | 1.6e+01 | 206 |
| fr | 2000_09 | 1fjf:I | 2.1 | 2.3 | -2.540748e+01 | -3.873278e+00 | 5.5e+00 | 1.2e+01 | 1.9e+01 | 3.5 | 1.6e+01 | 1.7e+01 | 127 |
| fr | 2000_09 | 1fjf:J | 0.1 | 1.2 | -1.420465e+01 | -6.215135e+00 | 1.0e+00 | 3.1e+00 | 4.4e+01 | 3.1 | 9.2e+00 | 1.5e+01 | 98 |
| fr | 2000_09 | 1fjf:K | 1.2 | 1.6 | -6.139513e+00 | -4.599521e+00 | 3.4e+00 | 6.7e+00 | 7.5e+01 | 3.7 | 2.0e+01 | 2.4e+01 | 119 |
| fr | 2000_09 | 1fjf:L | 1.2 | 0 | -3.817500e+01 | -4.925806e+00 | 1.3e+01 | 1.3e+01 | 1.3e+01 | 2.5 | 0.0e+00 | 0.0e+00 | 124 |
| fr | 2000_09 | 1fjf:M | 3.1 | 2.3 | -2.106198e+01 | 9.010160e-01 | 0.0e+00 | 8.0e+00 | 2.3e+01 | 1.2 | 1.6e+01 | 1.8e+01 | 125 |
| fr | 2000_09 | 1fjf:N | 0.1 | 0 | -5.552727e+01 | -1.018000e+01 | 1.3e+01 | 1.7e+01 | 1.8e+01 | 17 | 0.0e+00 | 0.0e+00 | 60 |
| fr | 2000_09 | 1fjf:T | 4.3 | 3.7 | -1.624819e+01 | 9.003445e+00 | 3.0e+01 | 3.1e+01 | 3.1e+01 | 0.35 | 3.0e+01 | 3.0e+01 | 99 |
| fr | 2000_09 | THIS_month:psum | 2.7 | 1.7 | 6.2 | 7.6 | 8.1 | 12.9 | 42.7 | 17.2 | 18.3 | 21.9 | 131.8 |
| fr | 2004_03_05 | psum | 2.3 | 1.8 | 1.3 | 2.1 | 10.2 | 14.7 | 42.4 | 14.8 | 20.8 | 24.1 | 152.9 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |