| METHOD about: | ../../../doc/explain_methods.html#PX_about_pdbblast |
| METHOD url: | PDB-BLAST |
| TYPE : | fr |
| NPROT : | 330 |
| NWEEKS : | 156 |
| NOTE 1 : | here ALL results obtained for PDB-BLAST in month 2000_07 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | Target | -lnP_MMT | Z_CE | Q_LG1 | Q_LG2 | N3.5A_Gbl% | N5A_Gbl% | ModN% | ServScore | N3.5A_ext_CE% | N5A_ext_CE% | TgtN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| fr | 2000_07 | THIS_month:psum | 3.5 | 2.4 | 22.7 | 7.6 | 12.9 | 17.7 | 45.8 | 1 | 21.7 | 24.6 | 189.6 |
| fr | 2000_07 | 1dow:A | 2.3 | 2.8 | 3.479744e+00 | 7.791561e+00 | 3.0e+00 | 5.0e+00 | 6.0e+01 | 1 | 2.0e+01 | 2.7e+01 | 200 |
| fr | 2000_07 | 1dqp:B | 15.0 | 4.2 | 2.408558e+01 | 1.303013e+01 | 4.3e+01 | 4.7e+01 | 5.6e+01 | 1 | 4.7e+01 | 5.0e+01 | 230 |
| fr | 2000_07 | 1ds0:A | 1.4 | 1.6 | -8.218233e+00 | -9.715542e-01 | 2.2e+00 | 4.6e+00 | 2.2e+01 | 1 | 6.5e+00 | 7.7e+00 | 323 |
| fr | 2000_07 | 1dtd:B | 1.8 | 2.0 | -1.745143e+01 | -9.578929e+00 | 6.6e+00 | 2.0e+01 | 5.7e+01 | 1 | 2.0e+01 | 2.6e+01 | 61 |
| fr | 2000_07 | 1e2t:A | 1.8 | 2.6 | -1.197647e+01 | 1.141612e+00 | 2.6e+00 | 5.1e+00 | 1.9e+01 | 1 | 8.8e+00 | 1.1e+01 | 274 |
| fr | 2000_07 | 1e2t:D | 1.8 | 2.6 | -1.197647e+01 | 1.157960e+00 | 2.6e+00 | 5.1e+00 | 1.9e+01 | 1 | 8.8e+00 | 1.2e+01 | 274 |
| fr | 2000_07 | 1ec5:A | 1.4 | 3.7 | 4.075058e+01 | 1.041922e+01 | 4.4e+01 | 4.8e+01 | 5.4e+01 | 1 | 5.0e+01 | 5.0e+01 | 48 |
| fr | 2000_07 | 1eww:A | 2.1 | 1.6 | -1.382235e+01 | -6.298960e+00 | 4.4e+00 | 6.7e+00 | 4.9e+01 | 1 | 1.4e+01 | 2.0e+01 | 90 |
| fr | 2000_07 | 1exk:A | 1.3 | 1.6 | -1.017885e+01 | -7.333246e+00 | 8.9e+00 | 1.9e+01 | 7.6e+01 | 1 | 2.4e+01 | 3.0e+01 | 79 |
| fr | 2000_07 | 1exz:C | 3.2 | 1.6 | -8.982353e+00 | 2.498793e+00 | 2.3e+00 | 9.9e+00 | 5.2e+01 | 1 | 1.8e+01 | 2.1e+01 | 131 |
| fr | 2000_07 | 1f0k:A | 1.7 | 3.5 | -5.148036e+00 | -6.687775e-01 | 2.8e-01 | 1.4e+00 | 3.4e+01 | 1 | 7.7e+00 | 7.7e+00 | 351 |
| fr | 2000_07 | 1qjv:B | 1.3 | 2.0 | -8.601600e+00 | -7.003541e-01 | 8.8e-01 | 1.2e+00 | 2.1e+01 | 1 | 7.3e+00 | 8.5e+00 | 342 |
| fr | 2000_07 | 1qo2:A | 3.6 | 0 | -8.403688e+00 | -1.149861e+00 | 8.4e-01 | 3.8e+00 | 3.0e+01 | 1 | 0.0e+00 | 0.0e+00 | 238 |
| fr | 2000_07 | 3cao:A | 7.5 | 3.1 | -7.154907e+00 | 1.294350e+01 | 3.6e+01 | 4.5e+01 | 6.9e+01 | 1 | 4.8e+01 | 5.0e+01 | 102 |
| fr | 2000_07 | 3car:A | 7.7 | 3.1 | -7.139056e+00 | 1.230320e+01 | 3.6e+01 | 4.5e+01 | 6.9e+01 | 1 | 4.6e+01 | 4.9e+01 | 102 |
| fr | 2000_07 | THIS_month:psum | 3.5 | 2.4 | 22.7 | 7.6 | 12.9 | 17.7 | 45.8 | 1 | 21.7 | 24.6 | 189.6 |
| fr | 2002_11_20 | psum | 4.3 | 2.4 | 2.7 | 4.6 | 14.5 | 18.8 | 45.2 | 1 | 21.5 | 24.4 | 189.8 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |