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EVA summary for category threading, best of first 5 hits (1)

Contents

Local link to information about methods evaluated
All prediction results for threading

Common subset 1
Common subset 2
Common subset 3

All prediction results in ASCII (raw text)
Explanations of measures for prediction accuracy
For older versions of the results

About threading prediction methods evaluated

Method		Nprot	Nweek	Detailed results for method
ALL		625	257	method/index.html

3D-PSSM		450	207	method/3dpssm.html
BLAST		499	219	method/blast.html
FUGUE		530	225	method/fugue.html
Libellula		130	70	method/libellula.html
Prospect		138	67	method/prospect.html
PSI-BLAST		509	223	method/psiblast.html
SAMt99		208	127	method/samt99.html
ssearch		498	217	method/ssearch.html
Superfamily		278	120	method/superfamily.html

Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
Detail level 1 (this file) as ASCII

(...) contain standard error of a mean

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	14	1	3D-PSSM	10	5	9	11	32.6 (+/-6.9)
			BLAST	0	0	2	3	10.9 (+/-4.7)
			FUGUE	11	7	9	12	32.6 (+/-7.2)
			Libellula	9	5	7	11	25.8 (+/-6.0)
			Prospect	9	6	8	11	21.1 (+/-5.8)
			PSI-BLAST	4	2	4	3	15.2 (+/-4.8)
			SAMt99	7	4	6	10	29.9 (+/-7.4)
			ssearch	2	1	2	7	11.2 (+/-5.8)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	58	1	3D-PSSM	40	26	21	42	34.2 (+/-4.0)
			BLAST	17	12	11	28	19.6 (+/-3.5)
			FUGUE	38	28	22	47	33.2 (+/-4.2)
			PSI-BLAST	18	10	9	24	18.7 (+/-3.2)
			SAMt99	36	24	17	42	33.4 (+/-4.3)
			ssearch	24	18	13	28	21.0 (+/-3.9)
			Superfamily	28	16	12	34	27.0 (+/-4.1)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	124	1	3D-PSSM	90	53	56	96	29.9 (+/-2.6)
			BLAST	25	14	22	43	14.9 (+/-2.2)
			FUGUE	88	64	57	101	28.8 (+/-2.7)
			PSI-BLAST	44	25	25	48	18.6 (+/-2.2)
			SAMt99	76	45	43	83	28.6 (+/-2.8)
			ssearch	44	30	28	59	18.1 (+/-2.6)

Last update: Dec 15, 2003
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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