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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 625 257 method/index.html
3D-PSSM   450207method/3dpssm.html
BLAST   499219method/blast.html
FUGUE   530225method/fugue.html
Libellula   13070method/libellula.html
Prospect   13867method/prospect.html
PSI-BLAST   509223method/psiblast.html
SAMt99   208127method/samt99.html
ssearch   498217method/ssearch.html
Superfamily   278120method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 11413D-PSSM10
8.6
(+/-1.3)		5
3.5
(+/-0.3)		9
3.5
(+/-3.0)		11
8.9
(+/-2.0)		32.6
(+/-6.9)		43.3
(+/-7.6)
BLAST0
2.1
(+/-0.3)		0
2.5
(+/-0.1)		2
-9.1
(+/-2.4)		3
-0.4
(+/-0.9)		10.9
(+/-4.7)		15.5
(+/-5.6)
FUGUE11
9.4
(+/-1.2)		7
4.1
(+/-0.3)		9
4.5
(+/-2.9)		12
9.5
(+/-2.0)		32.6
(+/-7.2)		42.6
(+/-8.3)
Libellula9
8.9
(+/-1.6)		5
3.3
(+/-0.3)		7
5.3
(+/-4.1)		11
6.3
(+/-2.5)		25.8
(+/-6.0)		37.4
(+/-7.5)
Prospect9
8.3
(+/-1.5)		6
3.5
(+/-0.3)		8
6.3
(+/-3.6)		11
6.7
(+/-2.5)		21.1
(+/-5.8)		32.2
(+/-6.6)
PSI-BLAST4
4.1
(+/-1.0)		2
3.0
(+/-0.3)		4
-4.6
(+/-4.0)		3
1.3
(+/-2.3)		15.2
(+/-4.8)		21.4
(+/-5.7)
SAMt997
6.1
(+/-1.3)		4
3.0
(+/-0.3)		6
3.3
(+/-4.7)		10
7.6
(+/-2.2)		29.9
(+/-7.4)		36.8
(+/-8.2)
ssearch2
3.2
(+/-0.8)		1
2.9
(+/-0.2)		2
-3.2
(+/-1.7)		7
2.3
(+/-1.0)		11.2
(+/-5.8)		17.5
(+/-7.0)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 25813D-PSSM40
9.6
(+/-1.0)		26
3.6
(+/-0.1)		21
0.2
(+/-1.4)		42
9.1
(+/-1.3)		34.2
(+/-4.0)		42.3
(+/-4.3)
BLAST17
3.8
(+/-0.4)		12
2.8
(+/-0.1)		11
-6.5
(+/-1.9)		28
2.8
(+/-1.2)		19.6
(+/-3.5)		24.0
(+/-3.8)
FUGUE38
8.8
(+/-0.9)		28
3.8
(+/-0.1)		22
0.6
(+/-1.2)		47
9.8
(+/-1.2)		33.2
(+/-4.2)		42.2
(+/-4.5)
PSI-BLAST18
5.0
(+/-0.6)		10
2.8
(+/-0.2)		9
-7.7
(+/-1.8)		24
2.2
(+/-1.2)		18.7
(+/-3.2)		24.0
(+/-3.5)
SAMt9936
7.8
(+/-0.8)		24
3.6
(+/-0.2)		17
-0.9
(+/-1.7)		42
9.4
(+/-1.4)		33.4
(+/-4.3)		39.8
(+/-4.6)
ssearch24
5.8
(+/-0.8)		18
3.2
(+/-0.1)		13
-1.0
(+/-1.3)		28
5.2
(+/-1.4)		21.0
(+/-3.9)		27.9
(+/-4.4)
Superfamily28
6.3
(+/-0.7)		16
3.2
(+/-0.1)		12
-1.7
(+/-1.3)		34
5.4
(+/-1.3)		27.0
(+/-4.1)		33.0
(+/-4.4)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 312413D-PSSM90
9.4
(+/-0.6)		53
3.6
(+/-0.1)		56
2.2
(+/-0.9)		96
9.4
(+/-0.8)		29.9
(+/-2.6)		38.7
(+/-2.8)
BLAST25
3.2
(+/-0.2)		14
2.5
(+/-0.1)		22
-6.5
(+/-1.2)		43
1.8
(+/-0.7)		14.9
(+/-2.2)		18.8
(+/-2.4)
FUGUE88
8.9
(+/-0.5)		64
3.9
(+/-0.1)		57
2.5
(+/-0.8)		101
10.2
(+/-0.8)		28.8
(+/-2.7)		37.4
(+/-3.0)
PSI-BLAST44
5.0
(+/-0.4)		25
2.8
(+/-0.1)		25
-5.8
(+/-1.3)		48
3.0
(+/-0.9)		18.6
(+/-2.2)		23.5
(+/-2.4)
SAMt9976
7.2
(+/-0.5)		45
3.3
(+/-0.1)		43
0.8
(+/-1.2)		83
8.1
(+/-0.9)		28.6
(+/-2.8)		34.7
(+/-3.0)
ssearch44
4.9
(+/-0.4)		30
3.0
(+/-0.1)		28
-0.3
(+/-0.8)		59
5.3
(+/-0.9)		18.1
(+/-2.6)		23.8
(+/-2.9)

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