Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom

EVA summary for category threading, best of first 5 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 649 268 method/index.html
3D-PSSM   469217method/3dpssm.html
BLAST   521230method/blast.html
FUGUE   550235method/fugue.html
Libellula   14478method/libellula.html
Prospect   14471method/prospect.html
PSI-BLAST   533234method/psiblast.html
SAMt99   216135method/samt99.html
ssearch   522228method/ssearch.html
Superfamily   297130method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11513D-PSSM10
8.2
(+/-1.3)		5
3.5
(+/-0.3)		10
3.4
(+/-2.8)		11
8.4
(+/-1.9)		30.4
(+/-6.8)		40.6
(+/-7.6)		46.5
(+/-5.7)		51.9
(+/-5.9)		87.1
(+/-2.7)
BLAST0
2.1
(+/-0.2)		0
2.6
(+/-0.1)		2
-8.9
(+/-2.2)		3
-0.3
(+/-0.9)		10.2
(+/-4.4)		14.6
(+/-5.3)		22.8
(+/-4.2)		26.9
(+/-4.7)		52.5
(+/-9.8)
FUGUE12
9.1
(+/-1.2)		7
4.0
(+/-0.3)		10
4.8
(+/-2.7)		13
9.0
(+/-1.9)		30.5
(+/-7.0)		40.0
(+/-8.2)		53.1
(+/-5.0)		57.7
(+/-4.9)		93.6
(+/-1.8)
Libellula9
8.5
(+/-1.5)		5
3.3
(+/-0.3)		8
5.2
(+/-3.8)		11
6.0
(+/-2.3)		24.2
(+/-5.8)		35.2
(+/-7.4)		45.5
(+/-5.3)		51.7
(+/-5.3)		92.9
(+/-2.3)
Prospect9
8.0
(+/-1.4)		6
3.4
(+/-0.3)		9
6.1
(+/-3.3)		12
6.5
(+/-2.4)		19.7
(+/-5.6)		30.2
(+/-6.4)		44.7
(+/-4.8)		49.9
(+/-5.1)		95.9
(+/-1.1)
PSI-BLAST4
4.0
(+/-0.9)		2
3.0
(+/-0.2)		4
-4.9
(+/-3.7)		3
1.2
(+/-2.1)		14.3
(+/-4.6)		20.1
(+/-5.5)		28.8
(+/-5.5)		31.4
(+/-5.7)		50.3
(+/-8.3)
SAMt997
5.7
(+/-1.3)		4
3.0
(+/-0.3)		6
2.3
(+/-4.5)		10
7.1
(+/-2.1)		27.9
(+/-7.2)		34.3
(+/-8.0)		37.8
(+/-6.5)		41.1
(+/-6.6)		58.9
(+/-7.2)
ssearch2
3.2
(+/-0.7)		2
3.0
(+/-0.2)		3
-2.8
(+/-1.6)		8
2.3
(+/-0.9)		10.5
(+/-5.4)		16.4
(+/-6.6)		32.4
(+/-5.1)		38.9
(+/-5.2)		101.7
(+/-8.7)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 26613D-PSSM44
9.1
(+/-0.9)		29
3.6
(+/-0.1)		26
1.1
(+/-1.5)		48
9.2
(+/-1.2)		34.7
(+/-3.8)		42.9
(+/-4.0)		49.2
(+/-3.2)		54.4
(+/-3.3)		86.7
(+/-1.6)
BLAST18
3.6
(+/-0.3)		12
2.8
(+/-0.1)		13
-6.2
(+/-1.9)		30
2.5
(+/-1.1)		19.9
(+/-3.4)		24.2
(+/-3.7)		28.2
(+/-3.1)		32.4
(+/-3.3)		46.8
(+/-3.3)
FUGUE42
8.4
(+/-0.8)		30
3.7
(+/-0.1)		26
0.9
(+/-1.2)		52
9.6
(+/-1.2)		33.3
(+/-3.9)		42.4
(+/-4.2)		50.3
(+/-3.2)		55.4
(+/-3.2)		94.3
(+/-1.4)
PSI-BLAST19
4.7
(+/-0.6)		10
2.7
(+/-0.2)		11
-7.5
(+/-1.8)		25
1.4
(+/-1.2)		19.1
(+/-3.1)		24.3
(+/-3.4)		28.9
(+/-3.1)		32.2
(+/-3.2)		48.0
(+/-3.5)
SAMt9940
7.4
(+/-0.7)		26
3.5
(+/-0.2)		20
-0.7
(+/-1.8)		46
9.1
(+/-1.3)		33.6
(+/-4.0)		40.3
(+/-4.3)		46.1
(+/-3.6)		50.7
(+/-3.7)		69.9
(+/-3.7)
ssearch26
5.6
(+/-0.7)		19
3.2
(+/-0.1)		17
-0.7
(+/-1.3)		33
5.3
(+/-1.3)		21.6
(+/-3.8)		28.3
(+/-4.2)		39.7
(+/-3.4)		45.2
(+/-3.4)		91.9
(+/-1.4)
Superfamily32
6.1
(+/-0.7)		18
3.2
(+/-0.1)		15
-0.8
(+/-1.4)		39
5.7
(+/-1.3)		28.2
(+/-3.9)		34.6
(+/-4.1)		39.2
(+/-3.4)		43.8
(+/-3.5)		85.6
(+/-1.1)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 313213D-PSSM94
9.1
(+/-0.5)		56
3.6
(+/-0.1)		61
2.6
(+/-0.9)		102
9.5
(+/-0.8)		30.4
(+/-2.5)		39.2
(+/-2.7)		48.6
(+/-2.1)		54.2
(+/-2.2)		87.2
(+/-1.1)
BLAST26
3.1
(+/-0.2)		14
2.5
(+/-0.1)		24
-6.4
(+/-1.2)		45
1.7
(+/-0.7)		15.4
(+/-2.2)		19.2
(+/-2.4)		25.0
(+/-2.0)		28.7
(+/-2.1)		45.7
(+/-2.4)
FUGUE92
8.6
(+/-0.5)		66
3.8
(+/-0.1)		61
2.6
(+/-0.8)		106
10.1
(+/-0.8)		29.1
(+/-2.7)		37.8
(+/-2.9)		50.7
(+/-2.1)		56.1
(+/-2.1)		95.6
(+/-0.8)
PSI-BLAST45
4.8
(+/-0.4)		25
2.8
(+/-0.1)		27
-5.8
(+/-1.3)		49
2.5
(+/-0.9)		18.8
(+/-2.2)		23.7
(+/-2.4)		28.9
(+/-2.2)		32.0
(+/-2.3)		47.3
(+/-2.4)
SAMt9980
7.1
(+/-0.5)		47
3.3
(+/-0.1)		46
0.8
(+/-1.2)		87
8.0
(+/-0.9)		29.0
(+/-2.7)		35.2
(+/-2.9)		42.3
(+/-2.4)		46.9
(+/-2.5)		69.3
(+/-2.5)
ssearch46
4.8
(+/-0.4)		31
3.0
(+/-0.1)		32
-0.1
(+/-0.8)		64
5.3
(+/-0.9)		18.5
(+/-2.6)		24.2
(+/-2.8)		36.9
(+/-2.3)		42.5
(+/-2.4)		91.9
(+/-1.5)

Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top