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EVA summary for category threading, best of first 5 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 536 224 method/index.html
3D-PSSM   425198method/3dpssm.html
BLAST   17088method/blast.html
FUGUE   504216method/fugue.html
Libellula   10661method/libellula.html
Prospect   12963method/prospect.html
PSI-BLAST   17389method/psiblast.html
SAMt99   201120method/samt99.html
ssearch   16985method/ssearch.html
Superfamily   253111method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 1813D-PSSM6
10.0
(+/-1.8)		4
3.7
(+/-0.4)		5
4.7
(+/-3.1)		6
8.0
(+/-2.1)		25.4
(+/-7.4)		36.5
(+/-9.7)		41.9
(+/-7.6)		46.4
(+/-7.5)		84.2
(+/-4.8)
BLAST0
2.1
(+/-0.3)		0
2.5
(+/-0.1)		0
-11.7
(+/-2.5)		1
-0.2
(+/-0.7)		4.2
(+/-1.1)		7.3
(+/-1.4)		15.6
(+/-3.2)		18.5
(+/-3.7)		43.9
(+/-16.9)
FUGUE7
11.6
(+/-1.6)		6
4.5
(+/-0.3)		5
5.8
(+/-3.2)		8
11.0
(+/-1.7)		24.4
(+/-7.7)		33.4
(+/-10.5)		54.5
(+/-5.7)		59.1
(+/-4.9)		93.0
(+/-3.1)
Libellula6
11.5
(+/-2.0)		5
3.8
(+/-0.4)		4
8.0
(+/-5.8)		6
9.1
(+/-2.1)		24.6
(+/-7.6)		38.0
(+/-10.7)		46.4
(+/-7.8)		52.2
(+/-7.7)		93.6
(+/-4.3)
Prospect5
10.2
(+/-2.1)		4
3.9
(+/-0.4)		4
8.5
(+/-4.5)		7
9.7
(+/-2.1)		15.7
(+/-6.3)		25.9
(+/-7.9)		43.9
(+/-6.3)		48.9
(+/-6.3)		97.2
(+/-1.1)
PSI-BLAST2
5.0
(+/-1.6)		2
3.0
(+/-0.4)		2
-5.2
(+/-4.5)		2
2.1
(+/-2.7)		9.7
(+/-4.9)		14.7
(+/-7.1)		26.6
(+/-8.4)		28.7
(+/-8.7)		48.2
(+/-13.4)
SAMt996
8.3
(+/-1.9)		4
3.3
(+/-0.5)		3
5.0
(+/-6.6)		6
8.0
(+/-2.7)		25.1
(+/-7.5)		33.7
(+/-10.4)		36.6
(+/-8.2)		39.7
(+/-8.2)		59.4
(+/-10.9)
ssearch1
3.6
(+/-1.3)		1
3.0
(+/-0.4)		0
-3.3
(+/-0.7)		4
2.8
(+/-1.5)		8.4
(+/-6.4)		14.0
(+/-8.8)		30.4
(+/-7.2)		35.1
(+/-6.8)		107.9
(+/-16.4)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 23313D-PSSM21
9.1
(+/-1.3)		13
3.5
(+/-0.2)		11
0.8
(+/-1.7)		23
9.0
(+/-1.7)		27.8
(+/-4.9)		36.1
(+/-5.5)		45.4
(+/-4.3)		50.4
(+/-4.4)		85.4
(+/-2.1)
BLAST10
3.8
(+/-0.5)		8
2.9
(+/-0.2)		5
-7.6
(+/-2.5)		14
2.3
(+/-1.7)		14.5
(+/-4.2)		18.6
(+/-4.6)		24.0
(+/-3.9)		27.9
(+/-4.3)		41.3
(+/-4.3)
FUGUE23
9.0
(+/-1.2)		16
3.7
(+/-0.2)		12
0.8
(+/-1.6)		27
9.7
(+/-1.6)		28.1
(+/-5.0)		36.8
(+/-5.6)		47.1
(+/-4.2)		52.4
(+/-4.3)		95.6
(+/-1.1)
PSI-BLAST12
5.2
(+/-0.7)		7
2.9
(+/-0.2)		5
-7.1
(+/-1.7)		14
3.4
(+/-1.6)		15.7
(+/-4.1)		21.1
(+/-4.7)		27.3
(+/-4.2)		30.9
(+/-4.3)		47.1
(+/-4.8)
SAMt9920
6.8
(+/-0.9)		11
3.2
(+/-0.2)		6
-3.8
(+/-2.2)		19
7.0
(+/-1.9)		24.1
(+/-5.1)		30.2
(+/-5.8)		38.0
(+/-4.9)		42.4
(+/-5.1)		64.3
(+/-5.4)
ssearch14
6.5
(+/-1.3)		10
3.1
(+/-0.2)		6
-1.2
(+/-1.6)		16
5.0
(+/-2.0)		16.6
(+/-4.8)		22.7
(+/-5.3)		35.8
(+/-4.6)		41.3
(+/-4.6)		92.4
(+/-1.5)
Superfamily15
6.2
(+/-1.1)		9
3.2
(+/-0.2)		5
-2.1
(+/-1.8)		19
5.5
(+/-1.8)		21.5
(+/-5.0)		27.3
(+/-5.6)		34.6
(+/-4.7)		39.2
(+/-4.8)		84.6
(+/-1.6)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 35113D-PSSM37
9.8
(+/-0.9)		21
3.6
(+/-0.1)		23
2.8
(+/-1.3)		39
9.5
(+/-1.2)		28.4
(+/-3.7)		37.6
(+/-4.1)		47.1
(+/-3.2)		52.6
(+/-3.3)		86.4
(+/-1.7)
BLAST12
3.5
(+/-0.4)		8
2.7
(+/-0.1)		8
-7.0
(+/-1.9)		18
2.2
(+/-1.2)		13.7
(+/-3.3)		17.1
(+/-3.6)		23.7
(+/-3.1)		27.3
(+/-3.3)		43.1
(+/-4.1)
FUGUE40
9.6
(+/-0.9)		28
4.0
(+/-0.1)		24
3.1
(+/-1.3)		45
10.3
(+/-1.1)		27.4
(+/-3.9)		36.4
(+/-4.3)		50.3
(+/-3.1)		55.9
(+/-3.2)		94.8
(+/-1.1)
PSI-BLAST20
5.4
(+/-0.6)		13
3.0
(+/-0.2)		10
-5.4
(+/-1.6)		22
4.0
(+/-1.3)		17.1
(+/-3.4)		22.4
(+/-3.8)		29.8
(+/-3.5)		33.2
(+/-3.6)		50.0
(+/-4.0)
SAMt9935
7.3
(+/-0.7)		19
3.4
(+/-0.2)		15
-0.5
(+/-2.0)		33
7.7
(+/-1.4)		26.0
(+/-3.9)		32.6
(+/-4.5)		40.0
(+/-3.7)		44.3
(+/-3.9)		65.5
(+/-4.2)
ssearch21
6.0
(+/-0.9)		13
3.2
(+/-0.2)		9
-0.7
(+/-1.3)		27
5.2
(+/-1.4)		16.5
(+/-3.8)		22.7
(+/-4.3)		36.8
(+/-3.6)		42.4
(+/-3.6)		94.2
(+/-2.8)

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