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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 610 247 method/index.html
3D-PSSM   417194method/3dpssm.html
BLAST   591242method/blast.html
FUGUE   496211method/fugue.html
Libellula   9957method/libellula.html
Prospect   12460method/prospect.html
PSI-BLAST   595246method/psiblast.html
SAMt99   199118method/samt99.html
ssearch   589243method/ssearch.html
Superfamily   245106method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 12613D-PSSM17
8.5
(+/-1.1)		12
3.4
(+/-0.2)		12
2.6
(+/-1.8)		18
6.4
(+/-1.5)		21.6
(+/-4.1)		30.6
(+/-5.0)
BLAST0
1.8
(+/-0.2)		0
2.2
(+/-0.1)		1
-10.2
(+/-1.5)		2
-1.4
(+/-0.8)		4.6
(+/-0.9)		7.8
(+/-1.3)
FUGUE18
8.7
(+/-1.2)		13
3.7
(+/-0.3)		14
3.5
(+/-1.8)		18
6.3
(+/-1.5)		19.4
(+/-4.0)		28.2
(+/-5.1)
Libellula16
8.5
(+/-1.2)		8
3.0
(+/-0.3)		12
4.3
(+/-2.3)		18
6.3
(+/-1.5)		20.5
(+/-4.0)		29.7
(+/-5.2)
Prospect13
7.4
(+/-1.2)		11
3.5
(+/-0.2)		12
3.8
(+/-2.1)		17
5.8
(+/-1.6)		16.9
(+/-4.1)		25.5
(+/-5.0)
PSI-BLAST5
3.2
(+/-0.5)		3
2.6
(+/-0.2)		5
-6.3
(+/-2.3)		8
1.1
(+/-1.3)		8.8
(+/-2.3)		13.6
(+/-3.3)
SAMt9913
6.1
(+/-1.0)		9
3.0
(+/-0.3)		10
2.2
(+/-2.8)		14
4.6
(+/-1.6)		17.6
(+/-4.2)		23.6
(+/-5.1)
ssearch3
3.1
(+/-0.6)		2
2.7
(+/-0.2)		1
-3.4
(+/-0.8)		9
0.8
(+/-1.0)		5.5
(+/-2.1)		10.3
(+/-3.0)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 25913D-PSSM39
9.3
(+/-0.9)		25
3.5
(+/-0.1)		20
-0.1
(+/-1.3)		42
7.5
(+/-1.3)		28.7
(+/-3.6)		37.1
(+/-4.0)
BLAST14
3.3
(+/-0.3)		8
2.6
(+/-0.1)		9
-7.6
(+/-1.9)		24
1.9
(+/-1.2)		16.5
(+/-3.2)		20.7
(+/-3.4)
FUGUE36
8.4
(+/-0.9)		27
3.6
(+/-0.1)		20
0.4
(+/-1.2)		43
7.6
(+/-1.2)		26.0
(+/-3.6)		35.2
(+/-4.1)
PSI-BLAST20
4.2
(+/-0.5)		8
2.7
(+/-0.1)		7
-11.0
(+/-1.7)		21
0.6
(+/-1.1)		15.7
(+/-2.5)		20.8
(+/-2.9)
SAMt9935
7.1
(+/-0.7)		22
3.3
(+/-0.2)		15
-1.6
(+/-1.7)		39
7.1
(+/-1.4)		25.8
(+/-3.8)		32.2
(+/-4.1)
ssearch23
5.7
(+/-0.8)		17
3.1
(+/-0.2)		10
-1.5
(+/-1.2)		26
4.2
(+/-1.4)		18.3
(+/-3.6)		24.9
(+/-4.1)
Superfamily27
6.0
(+/-0.7)		14
3.1
(+/-0.1)		11
-1.6
(+/-1.3)		33
4.4
(+/-1.3)		21.9
(+/-3.8)		28.8
(+/-4.2)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 314413D-PSSM99
8.8
(+/-0.5)		58
3.5
(+/-0.1)		63
2.2
(+/-0.8)		107
8.2
(+/-0.8)		26.9
(+/-2.3)		35.6
(+/-2.5)
BLAST25
3.0
(+/-0.2)		11
2.5
(+/-0.1)		25
-6.2
(+/-1.1)		44
1.4
(+/-0.7)		14.1
(+/-2.0)		17.8
(+/-2.1)
FUGUE96
8.3
(+/-0.5)		69
3.7
(+/-0.1)		65
2.8
(+/-0.8)		110
8.8
(+/-0.8)		25.0
(+/-2.4)		33.5
(+/-2.6)
PSI-BLAST42
3.9
(+/-0.3)		16
2.6
(+/-0.1)		28
-7.5
(+/-1.2)		49
1.3
(+/-0.7)		15.5
(+/-1.8)		19.9
(+/-1.9)
SAMt9983
6.8
(+/-0.4)		48
3.2
(+/-0.1)		49
0.6
(+/-1.1)		88
6.8
(+/-0.8)		25.3
(+/-2.4)		31.3
(+/-2.6)
ssearch48
4.6
(+/-0.4)		31
3.0
(+/-0.1)		29
-0.4
(+/-0.7)		63
4.5
(+/-0.8)		16.7
(+/-2.3)		22.1
(+/-2.6)

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