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EVA summary for category threading, best of first 5 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 610 247 method/index.html
3D-PSSM   417194method/3dpssm.html
BLAST   591242method/blast.html
FUGUE   496211method/fugue.html
Libellula   9957method/libellula.html
Prospect   12460method/prospect.html
PSI-BLAST   596246method/psiblast.html
SAMt99   199118method/samt99.html
ssearch   589243method/ssearch.html
Superfamily   245106method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 12613D-PSSM17
8.5
(+/-1.1)		12
3.4
(+/-0.2)		12
2.6
(+/-1.8)		18
6.4
(+/-1.5)		21.6
(+/-4.1)		30.6
(+/-5.0)		40.7
(+/-4.3)		46.4
(+/-4.5)		83.7
(+/-2.6)
BLAST0
1.8
(+/-0.2)		0
2.2
(+/-0.1)		1
-10.2
(+/-1.5)		2
-1.4
(+/-0.8)		4.6
(+/-0.9)		7.8
(+/-1.3)		14.7
(+/-1.6)		19.4
(+/-2.2)		39.3
(+/-4.1)
FUGUE18
8.7
(+/-1.2)		13
3.7
(+/-0.3)		14
3.5
(+/-1.8)		18
6.3
(+/-1.5)		19.4
(+/-4.0)		28.2
(+/-5.1)		41.0
(+/-4.3)		46.5
(+/-4.2)		92.3
(+/-2.1)
Libellula16
8.5
(+/-1.2)		8
3.0
(+/-0.3)		12
4.3
(+/-2.3)		18
6.3
(+/-1.5)		20.5
(+/-4.0)		29.7
(+/-5.2)		37.2
(+/-4.6)		43.0
(+/-4.7)		92.8
(+/-2.7)
Prospect13
7.4
(+/-1.2)		11
3.5
(+/-0.2)		12
3.8
(+/-2.1)		17
5.8
(+/-1.6)		16.9
(+/-4.1)		25.5
(+/-5.0)		38.3
(+/-4.1)		44.0
(+/-4.1)		95.1
(+/-0.9)
PSI-BLAST3
2.6
(+/-0.4)		2
2.4
(+/-0.2)		3
-8.8
(+/-1.8)		5
-0.4
(+/-1.0)		5.8
(+/-1.0)		9.9
(+/-1.5)		14.8
(+/-1.4)		17.9
(+/-1.6)		35.3
(+/-3.4)
SAMt9913
6.1
(+/-1.0)		9
3.0
(+/-0.3)		10
2.2
(+/-2.8)		14
4.6
(+/-1.6)		17.6
(+/-4.2)		23.6
(+/-5.1)		29.7
(+/-4.2)		34.0
(+/-4.2)		59.1
(+/-4.6)
ssearch3
3.1
(+/-0.6)		2
2.7
(+/-0.2)		1
-3.4
(+/-0.8)		9
0.8
(+/-1.0)		5.5
(+/-2.1)		10.3
(+/-3.0)		25.0
(+/-2.7)		31.6
(+/-2.8)		89.9
(+/-2.4)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 25913D-PSSM39
9.3
(+/-0.9)		25
3.5
(+/-0.1)		20
-0.1
(+/-1.3)		42
7.5
(+/-1.3)		28.7
(+/-3.6)		37.1
(+/-4.0)		46.0
(+/-3.2)		51.3
(+/-3.3)		86.2
(+/-1.7)
BLAST14
3.3
(+/-0.3)		8
2.6
(+/-0.1)		9
-7.6
(+/-1.9)		24
1.9
(+/-1.2)		16.5
(+/-3.2)		20.7
(+/-3.4)		24.6
(+/-2.9)		28.7
(+/-3.2)		43.9
(+/-3.4)
FUGUE36
8.4
(+/-0.9)		27
3.6
(+/-0.1)		20
0.4
(+/-1.2)		43
7.6
(+/-1.2)		26.0
(+/-3.6)		35.2
(+/-4.1)		45.4
(+/-3.1)		51.2
(+/-3.1)		94.9
(+/-1.3)
PSI-BLAST20
4.2
(+/-0.5)		8
2.7
(+/-0.1)		7
-11.0
(+/-1.7)		21
0.6
(+/-1.1)		15.7
(+/-2.5)		20.8
(+/-2.9)		23.5
(+/-2.6)		26.4
(+/-2.8)		38.5
(+/-3.1)
SAMt9935
7.1
(+/-0.7)		22
3.3
(+/-0.2)		15
-1.6
(+/-1.7)		39
7.1
(+/-1.4)		25.8
(+/-3.8)		32.2
(+/-4.1)		39.3
(+/-3.6)		44.0
(+/-3.7)		65.8
(+/-3.8)
ssearch23
5.7
(+/-0.8)		17
3.1
(+/-0.2)		10
-1.5
(+/-1.2)		26
4.2
(+/-1.4)		18.3
(+/-3.6)		24.9
(+/-4.1)		36.6
(+/-3.4)		42.0
(+/-3.5)		91.7
(+/-1.3)
Superfamily27
6.0
(+/-0.7)		14
3.1
(+/-0.1)		11
-1.6
(+/-1.3)		33
4.4
(+/-1.3)		21.9
(+/-3.8)		28.8
(+/-4.2)		35.9
(+/-3.4)		40.6
(+/-3.5)		85.8
(+/-1.1)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 314413D-PSSM99
8.8
(+/-0.5)		58
3.5
(+/-0.1)		63
2.2
(+/-0.8)		107
8.2
(+/-0.8)		26.9
(+/-2.3)		35.6
(+/-2.5)		46.0
(+/-2.0)		51.5
(+/-2.0)		85.9
(+/-1.1)
BLAST25
3.0
(+/-0.2)		11
2.5
(+/-0.1)		25
-6.2
(+/-1.1)		44
1.4
(+/-0.7)		14.1
(+/-2.0)		17.8
(+/-2.1)		23.2
(+/-1.8)		26.9
(+/-1.9)		43.9
(+/-2.0)
FUGUE96
8.3
(+/-0.5)		69
3.7
(+/-0.1)		65
2.8
(+/-0.8)		110
8.8
(+/-0.8)		25.0
(+/-2.4)		33.5
(+/-2.6)		47.1
(+/-2.0)		52.7
(+/-2.0)		95.2
(+/-0.8)
PSI-BLAST40
3.8
(+/-0.3)		15
2.5
(+/-0.1)		26
-8.4
(+/-1.2)		46
1.0
(+/-0.7)		15.0
(+/-1.7)		19.3
(+/-1.9)		22.4
(+/-1.7)		25.1
(+/-1.8)		38.6
(+/-1.9)
SAMt9983
6.8
(+/-0.4)		48
3.2
(+/-0.1)		49
0.6
(+/-1.1)		88
6.8
(+/-0.8)		25.3
(+/-2.4)		31.3
(+/-2.6)		38.6
(+/-2.2)		43.2
(+/-2.3)		67.0
(+/-2.3)
ssearch48
4.6
(+/-0.4)		31
3.0
(+/-0.1)		29
-0.4
(+/-0.7)		63
4.5
(+/-0.8)		16.7
(+/-2.3)		22.1
(+/-2.6)		34.9
(+/-2.1)		40.4
(+/-2.2)		90.5
(+/-1.0)

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