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EVA summary for category threading, best of first 5 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 568 229 method/index.html
3D-PSSM   381176method/3dpssm.html
BLAST   551224method/blast.html
FUGUE   460193method/fugue.html
Libellula   7242method/libellula.html
Prospect   10449method/prospect.html
PSI-BLAST   557228method/psiblast.html
SAMt99   182107method/samt99.html
ssearch   547225method/ssearch.html
Superfamily   21088method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11813D-PSSM11
7.8
(+/-1.1)		6
3.3
(+/-0.2)		10
4.1
(+/-2.4)		12
7.8
(+/-2.3)		21.7
(+/-5.8)		29.9
(+/-6.5)		39.3
(+/-5.4)		44.3
(+/-5.6)		81.6
(+/-3.3)
BLAST0
2.1
(+/-0.2)		0
2.3
(+/-0.1)		1
-7.3
(+/-1.4)		2
0.8
(+/-1.8)		7.0
(+/-4.2)		9.0
(+/-4.1)		17.5
(+/-3.8)		21.5
(+/-3.8)		43.8
(+/-5.0)
FUGUE12
8.4
(+/-1.3)		7
3.8
(+/-0.3)		11
5.0
(+/-2.4)		13
8.9
(+/-2.4)		21.5
(+/-6.1)		28.9
(+/-6.8)		43.3
(+/-5.7)		48.5
(+/-5.4)		92.2
(+/-2.1)
Libellula10
7.7
(+/-1.3)		5
2.9
(+/-0.3)		8
4.5
(+/-3.1)		12
8.1
(+/-2.3)		20.0
(+/-5.8)		27.9
(+/-6.7)		36.3
(+/-5.0)		42.6
(+/-5.1)		96.5
(+/-2.4)
Prospect9
6.8
(+/-1.3)		7
3.4
(+/-0.3)		9
5.4
(+/-2.9)		12
8.2
(+/-2.3)		17.7
(+/-5.6)		25.7
(+/-6.2)		39.5
(+/-5.4)		44.7
(+/-5.4)		93.6
(+/-1.3)
PSI-BLAST2
2.5
(+/-0.4)		1
2.5
(+/-0.2)		2
-7.5
(+/-2.2)		3
1.1
(+/-1.8)		8.5
(+/-4.1)		12.5
(+/-4.0)		16.3
(+/-3.8)		19.1
(+/-3.8)		36.9
(+/-4.6)
SAMt998
5.2
(+/-1.0)		5
3.0
(+/-0.3)		7
3.7
(+/-3.9)		10
6.6
(+/-2.4)		18.6
(+/-5.8)		22.6
(+/-6.2)		30.3
(+/-5.4)		33.7
(+/-5.4)		53.4
(+/-5.3)
ssearch1
3.1
(+/-0.8)		1
2.8
(+/-0.2)		1
-3.0
(+/-1.1)		7
3.1
(+/-2.1)		7.3
(+/-4.6)		10.8
(+/-4.7)		26.6
(+/-4.1)		33.0
(+/-4.1)		89.5
(+/-3.0)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 24413D-PSSM30
9.0
(+/-1.1)		18
3.5
(+/-0.2)		16
-0.0
(+/-1.7)		32
8.9
(+/-1.6)		31.1
(+/-4.4)		39.1
(+/-4.8)		47.3
(+/-3.8)		52.1
(+/-3.9)		86.5
(+/-2.0)
BLAST12
3.8
(+/-0.4)		8
2.8
(+/-0.1)		9
-5.3
(+/-2.4)		22
4.0
(+/-1.6)		20.6
(+/-4.3)		25.0
(+/-4.6)		28.7
(+/-3.9)		32.7
(+/-4.2)		47.7
(+/-4.1)
FUGUE28
8.2
(+/-1.0)		19
3.7
(+/-0.1)		16
0.3
(+/-1.5)		36
9.9
(+/-1.5)		29.4
(+/-4.6)		38.4
(+/-5.1)		48.8
(+/-3.7)		54.2
(+/-3.8)		95.1
(+/-1.4)
PSI-BLAST16
4.4
(+/-0.5)		7
2.8
(+/-0.2)		6
-9.8
(+/-2.0)		17
1.7
(+/-1.5)		19.2
(+/-3.5)		24.8
(+/-3.9)		26.8
(+/-3.5)		29.8
(+/-3.7)		41.4
(+/-3.9)
SAMt9926
6.8
(+/-0.7)		16
3.4
(+/-0.2)		11
-1.6
(+/-2.1)		31
8.7
(+/-1.7)		27.8
(+/-4.6)		34.0
(+/-5.0)		42.2
(+/-4.3)		46.9
(+/-4.5)		68.0
(+/-4.7)
ssearch20
6.1
(+/-1.0)		15
3.2
(+/-0.2)		9
-1.4
(+/-1.5)		23
6.0
(+/-1.8)		21.4
(+/-4.6)		28.4
(+/-5.0)		40.0
(+/-4.2)		45.3
(+/-4.3)		92.5
(+/-1.5)
Superfamily22
6.3
(+/-0.8)		11
3.2
(+/-0.1)		10
-1.4
(+/-1.6)		28
6.4
(+/-1.7)		26.1
(+/-4.7)		32.5
(+/-5.1)		39.3
(+/-4.1)		44.1
(+/-4.2)		85.1
(+/-1.3)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 312713D-PSSM87
8.5
(+/-0.5)		48
3.5
(+/-0.1)		57
2.3
(+/-0.9)		94
8.4
(+/-0.8)		26.4
(+/-2.5)		34.6
(+/-2.7)		45.4
(+/-2.1)		50.8
(+/-2.2)		85.6
(+/-1.1)
BLAST24
3.2
(+/-0.2)		13
2.6
(+/-0.1)		25
-4.7
(+/-1.2)		42
2.4
(+/-0.8)		15.4
(+/-2.3)		19.0
(+/-2.4)		24.8
(+/-2.1)		28.3
(+/-2.2)		46.0
(+/-2.2)
FUGUE85
8.2
(+/-0.5)		57
3.7
(+/-0.1)		59
3.0
(+/-0.8)		101
9.5
(+/-0.8)		24.9
(+/-2.6)		33.0
(+/-2.8)		47.5
(+/-2.2)		53.0
(+/-2.2)		95.1
(+/-0.8)
PSI-BLAST36
3.7
(+/-0.3)		14
2.5
(+/-0.1)		23
-7.7
(+/-1.3)		42
1.5
(+/-0.8)		16.2
(+/-2.1)		20.3
(+/-2.2)		23.4
(+/-2.0)		26.1
(+/-2.1)		39.6
(+/-2.1)
SAMt9972
6.4
(+/-0.4)		41
3.2
(+/-0.1)		42
0.5
(+/-1.2)		78
7.0
(+/-0.9)		24.7
(+/-2.6)		30.4
(+/-2.8)		38.5
(+/-2.4)		42.9
(+/-2.5)		66.7
(+/-2.5)
ssearch42
4.6
(+/-0.4)		27
2.9
(+/-0.1)		26
-0.4
(+/-0.8)		58
4.8
(+/-0.9)		16.0
(+/-2.5)		21.4
(+/-2.7)		34.9
(+/-2.3)		40.4
(+/-2.3)		90.0
(+/-1.2)

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