Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom

EVA summary for category threading, best of first 1 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 568 229 method/index.html
3D-PSSM   381176method/3dpssm.html
BLAST   551224method/blast.html
FUGUE   460193method/fugue.html
Libellula   7242method/libellula.html
Prospect   10449method/prospect.html
PSI-BLAST   557228method/psiblast.html
SAMt99   182107method/samt99.html
ssearch   547225method/ssearch.html
Superfamily   21088method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 11813D-PSSM8
5.1
(+/-1.1)		3
2.5
(+/-0.3)		6
0.2
(+/-2.2)		9
3.7
(+/-2.2)		13.5
(+/-5.3)		20.1
(+/-6.2)
BLAST0
1.5
(+/-0.2)		0
1.8
(+/-0.2)		1
-12.3
(+/-2.3)		2
-0.0
(+/-1.8)		5.8
(+/-4.0)		7.3
(+/-4.2)
FUGUE7
5.8
(+/-1.3)		5
3.1
(+/-0.4)		9
-0.5
(+/-3.3)		10
5.6
(+/-2.6)		12.8
(+/-5.7)		17.1
(+/-6.0)
Libellula7
5.3
(+/-1.1)		3
2.0
(+/-0.4)		5
-0.3
(+/-1.8)		9
4.4
(+/-2.2)		11.9
(+/-4.9)		18.1
(+/-5.9)
Prospect9
6.1
(+/-1.3)		5
2.7
(+/-0.3)		8
2.8
(+/-2.6)		7
4.5
(+/-2.0)		14.8
(+/-5.1)		22.8
(+/-6.0)
PSI-BLAST0
1.8
(+/-0.2)		0
1.9
(+/-0.2)		1
-10.3
(+/-2.2)		1
0.0
(+/-1.8)		6.6
(+/-4.2)		9.7
(+/-4.2)
SAMt997
4.7
(+/-1.1)		4
2.9
(+/-0.3)		7
1.5
(+/-3.7)		8
5.7
(+/-2.3)		14.1
(+/-4.3)		19.1
(+/-5.3)
ssearch1
2.3
(+/-0.8)		1
1.8
(+/-0.3)		0
-4.7
(+/-1.0)		4
0.5
(+/-1.8)		5.4
(+/-4.4)		7.0
(+/-4.3)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 24413D-PSSM27
8.1
(+/-1.1)		11
3.0
(+/-0.2)		10
-2.2
(+/-1.7)		27
6.2
(+/-1.7)		27.1
(+/-4.4)		34.6
(+/-4.9)
BLAST11
3.3
(+/-0.4)		5
2.3
(+/-0.2)		9
-7.4
(+/-2.3)		16
2.2
(+/-1.5)		18.4
(+/-4.2)		23.6
(+/-4.6)
FUGUE20
6.6
(+/-1.0)		13
3.1
(+/-0.2)		10
-1.9
(+/-1.6)		25
6.0
(+/-1.7)		24.0
(+/-4.6)		31.1
(+/-5.0)
PSI-BLAST12
3.3
(+/-0.5)		4
2.3
(+/-0.2)		3
-13.2
(+/-1.8)		13
0.5
(+/-1.4)		16.8
(+/-3.6)		22.5
(+/-4.0)
SAMt9923
5.7
(+/-0.7)		9
2.9
(+/-0.2)		10
-5.0
(+/-1.9)		26
5.5
(+/-1.6)		22.8
(+/-4.3)		29.4
(+/-4.9)
ssearch15
5.0
(+/-1.0)		9
2.6
(+/-0.2)		6
-4.2
(+/-1.3)		17
3.3
(+/-1.7)		17.3
(+/-4.3)		23.0
(+/-4.9)
Superfamily21
5.5
(+/-0.8)		9
2.8
(+/-0.2)		9
-7.2
(+/-2.2)		24
4.1
(+/-1.5)		22.4
(+/-4.5)		29.0
(+/-5.0)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 312713D-PSSM67
6.6
(+/-0.5)		29
2.8
(+/-0.1)		35
-0.6
(+/-0.9)		70
4.9
(+/-0.9)		20.8
(+/-2.4)		27.9
(+/-2.7)
BLAST20
2.5
(+/-0.2)		8
2.0
(+/-0.1)		21
-8.2
(+/-1.2)		30
0.8
(+/-0.8)		13.3
(+/-2.2)		16.9
(+/-2.4)
FUGUE57
6.0
(+/-0.5)		40
3.0
(+/-0.1)		37
-1.5
(+/-1.2)		67
5.4
(+/-0.9)		19.7
(+/-2.5)		25.9
(+/-2.8)
PSI-BLAST19
2.5
(+/-0.2)		6
2.0
(+/-0.1)		11
-12.6
(+/-1.2)		26
-0.6
(+/-0.7)		11.6
(+/-1.9)		15.6
(+/-2.0)
SAMt9963
5.4
(+/-0.4)		27
2.8
(+/-0.1)		39
-1.8
(+/-1.1)		68
5.0
(+/-0.9)		21.5
(+/-2.5)		27.0
(+/-2.8)
ssearch33
3.7
(+/-0.4)		19
2.3
(+/-0.1)		19
-2.1
(+/-0.7)		40
2.2
(+/-0.8)		13.2
(+/-2.3)		17.4
(+/-2.6)

Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top