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EVA summary for category threading, best of first 5 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 856 273 method/index.html
3D-PSSM   564213method/3dpssm.html
BLAST   833269method/blast.html
FUGUE   673230method/fugue.html
Libellula   9550method/libellula.html
Prospect   14560method/prospect.html
PSI-BLAST   838272method/psiblast.html
SAMt99   369165method/samt99.html
ssearch   832269method/ssearch.html
Superfamily   313105method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 13213D-PSSM25
11.9
(+/-1.2)		20
4.1
(+/-0.2)		17
4.6
(+/-1.9)		26
13.2
(+/-2.0)		37.5
(+/-5.3)		47.4
(+/-5.6)		53.9
(+/-4.6)		58.7
(+/-4.6)		86.4
(+/-2.4)
BLAST11
5.9
(+/-1.0)		8
3.2
(+/-0.2)		8
-2.5
(+/-2.4)		13
6.8
(+/-2.2)		20.9
(+/-5.0)		24.6
(+/-5.2)		31.1
(+/-4.8)		34.4
(+/-4.8)		50.6
(+/-4.6)
FUGUE26
12.0
(+/-1.2)		17
4.1
(+/-0.2)		19
4.6
(+/-1.7)		27
12.9
(+/-1.9)		35.0
(+/-5.2)		44.4
(+/-5.6)		54.6
(+/-4.3)		59.8
(+/-4.2)		92.7
(+/-1.5)
Libellula24
12.0
(+/-1.4)		16
3.5
(+/-0.3)		18
8.7
(+/-2.5)		26
13.0
(+/-1.9)		37.5
(+/-5.4)		46.0
(+/-5.7)		46.5
(+/-4.8)		52.3
(+/-4.9)		94.8
(+/-1.8)
Prospect22
10.5
(+/-1.3)		19
4.0
(+/-0.2)		17
5.2
(+/-2.0)		26
12.3
(+/-1.9)		31.2
(+/-5.2)		39.5
(+/-5.5)		50.2
(+/-4.3)		55.3
(+/-4.3)		91.7
(+/-1.5)
PSI-BLAST14
7.7
(+/-1.4)		11
3.4
(+/-0.3)		8
-2.4
(+/-2.3)		16
7.9
(+/-2.2)		25.3
(+/-5.4)		30.9
(+/-5.6)		34.6
(+/-5.3)		38.0
(+/-5.5)		54.0
(+/-5.4)
SAMt9922
10.3
(+/-1.5)		17
3.9
(+/-0.3)		15
3.9
(+/-2.4)		24
11.3
(+/-1.9)		34.5
(+/-5.6)		41.1
(+/-6.0)		46.4
(+/-5.0)		50.5
(+/-5.1)		68.7
(+/-4.6)
ssearch14
8.3
(+/-1.3)		14
3.7
(+/-0.2)		8
-0.3
(+/-1.4)		21
9.6
(+/-2.1)		24.5
(+/-5.5)		31.0
(+/-6.0)		44.6
(+/-4.9)		50.0
(+/-4.7)		91.6
(+/-2.1)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 212113D-PSSM105
13.7
(+/-0.7)		89
4.4
(+/-0.1)		54
3.5
(+/-1.1)		108
14.4
(+/-0.9)		43.6
(+/-2.3)		53.7
(+/-2.4)		60.0
(+/-1.9)		65.1
(+/-2.0)		89.1
(+/-1.0)
BLAST64
6.7
(+/-0.5)		47
3.4
(+/-0.1)		35
-0.9
(+/-1.5)		77
8.3
(+/-1.0)		28.1
(+/-2.5)		32.8
(+/-2.7)		36.0
(+/-2.4)		39.2
(+/-2.4)		50.7
(+/-2.3)
FUGUE100
12.7
(+/-0.7)		83
4.4
(+/-0.1)		52
3.0
(+/-1.0)		112
14.2
(+/-0.9)		38.9
(+/-2.6)		49.1
(+/-2.7)		58.7
(+/-1.9)		64.2
(+/-1.9)		95.3
(+/-0.8)
PSI-BLAST91
10.8
(+/-0.7)		74
4.0
(+/-0.1)		41
-0.9
(+/-1.4)		93
10.8
(+/-1.0)		36.5
(+/-2.4)		44.0
(+/-2.6)		46.9
(+/-2.4)		50.5
(+/-2.4)		60.9
(+/-2.5)
SAMt99102
12.4
(+/-0.7)		81
4.3
(+/-0.1)		53
3.0
(+/-1.2)		108
14.0
(+/-0.9)		41.4
(+/-2.6)		50.2
(+/-2.7)		56.1
(+/-2.2)		60.8
(+/-2.2)		77.6
(+/-2.1)
ssearch80
10.1
(+/-0.7)		67
3.9
(+/-0.1)		37
1.8
(+/-1.0)		87
11.6
(+/-1.1)		30.8
(+/-2.8)		39.4
(+/-3.0)		51.1
(+/-2.5)		56.4
(+/-2.5)		89.9
(+/-1.2)
Superfamily94
10.9
(+/-0.6)		71
4.0
(+/-0.1)		45
2.2
(+/-1.1)		99
11.8
(+/-1.0)		37.7
(+/-2.7)		45.2
(+/-2.9)		51.0
(+/-2.3)		55.5
(+/-2.3)		87.2
(+/-0.8)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 327013D-PSSM227
12.3
(+/-0.4)		182
4.2
(+/-0.1)		126
3.9
(+/-0.7)		234
13.3
(+/-0.6)		39.1
(+/-1.7)		49.1
(+/-1.8)		57.1
(+/-1.4)		62.2
(+/-1.4)		88.5
(+/-0.7)
BLAST123
6.0
(+/-0.3)		88
3.2
(+/-0.1)		78
-1.1
(+/-1.0)		143
6.7
(+/-0.7)		24.7
(+/-1.7)		29.1
(+/-1.8)		33.3
(+/-1.6)		36.4
(+/-1.6)		50.2
(+/-1.5)
FUGUE222
11.6
(+/-0.4)		172
4.3
(+/-0.1)		128
3.8
(+/-0.6)		241
13.3
(+/-0.6)		35.9
(+/-1.8)		45.5
(+/-1.9)		56.7
(+/-1.4)		62.1
(+/-1.3)		95.4
(+/-0.5)
PSI-BLAST174
9.2
(+/-0.4)		131
3.7
(+/-0.1)		89
-1.3
(+/-1.0)		183
9.2
(+/-0.7)		32.2
(+/-1.7)		38.6
(+/-1.8)		41.9
(+/-1.7)		45.3
(+/-1.7)		57.2
(+/-1.7)
SAMt99211
11.1
(+/-0.4)		165
4.0
(+/-0.1)		116
2.9
(+/-0.8)		220
12.3
(+/-0.6)		38.2
(+/-1.8)		46.0
(+/-1.9)		52.2
(+/-1.6)		56.7
(+/-1.6)		75.6
(+/-1.5)
ssearch159
8.6
(+/-0.4)		131
3.7
(+/-0.1)		83
1.7
(+/-0.6)		177
10.2
(+/-0.7)		27.2
(+/-1.9)		34.9
(+/-2.1)		47.6
(+/-1.7)		52.8
(+/-1.7)		90.6
(+/-0.8)

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