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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 842 268 method/index.html
3D-PSSM   561211method/3dpssm.html
BLAST   819264method/blast.html
FUGUE   669227method/fugue.html
Libellula   9349method/libellula.html
Prospect   14258method/prospect.html
PSI-BLAST   825267method/psiblast.html
SAMt99   367163method/samt99.html
ssearch   818264method/ssearch.html
Superfamily   309102method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 13113D-PSSM25
12.1
(+/-1.2)		20
4.1
(+/-0.2)		17
5.3
(+/-1.7)		25
12.4
(+/-1.9)		36.0
(+/-5.2)		46.1
(+/-5.6)
BLAST11
6.0
(+/-1.0)		8
3.1
(+/-0.2)		8
-1.9
(+/-2.4)		12
6.1
(+/-2.1)		19.1
(+/-4.8)		22.9
(+/-5.1)
FUGUE26
12.3
(+/-1.2)		17
4.1
(+/-0.2)		19
5.4
(+/-1.6)		26
12.0
(+/-1.7)		33.5
(+/-5.1)		43.2
(+/-5.7)
Libellula24
12.3
(+/-1.4)		16
3.6
(+/-0.3)		18
9.5
(+/-2.4)		25
12.2
(+/-1.8)		36.1
(+/-5.4)		44.9
(+/-5.7)
Prospect22
10.7
(+/-1.3)		19
4.1
(+/-0.2)		17
6.0
(+/-1.9)		25
11.6
(+/-1.8)		29.7
(+/-5.2)		38.2
(+/-5.5)
PSI-BLAST14
7.8
(+/-1.4)		11
3.4
(+/-0.3)		8
-1.8
(+/-2.2)		15
7.2
(+/-2.1)		23.6
(+/-5.3)		29.4
(+/-5.5)
SAMt9922
10.5
(+/-1.5)		17
3.9
(+/-0.3)		15
4.8
(+/-2.4)		23
10.5
(+/-1.8)		32.9
(+/-5.5)		39.7
(+/-6.0)
ssearch14
8.4
(+/-1.3)		14
3.7
(+/-0.2)		8
0.3
(+/-1.3)		20
8.7
(+/-2.0)		22.5
(+/-5.3)		29.2
(+/-5.8)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 211913D-PSSM104
13.8
(+/-0.7)		88
4.4
(+/-0.1)		53
3.5
(+/-1.1)		106
14.1
(+/-0.9)		42.9
(+/-2.3)		53.1
(+/-2.4)
BLAST63
6.7
(+/-0.5)		46
3.3
(+/-0.1)		34
-1.0
(+/-1.5)		75
8.0
(+/-1.0)		27.3
(+/-2.5)		32.0
(+/-2.7)
FUGUE99
12.7
(+/-0.7)		82
4.4
(+/-0.1)		51
3.0
(+/-1.0)		110
13.9
(+/-0.8)		38.1
(+/-2.6)		48.4
(+/-2.7)
PSI-BLAST90
10.8
(+/-0.7)		73
4.0
(+/-0.1)		40
-1.1
(+/-1.4)		91
10.4
(+/-1.0)		35.7
(+/-2.4)		43.2
(+/-2.5)
SAMt99101
12.5
(+/-0.7)		80
4.3
(+/-0.1)		52
2.9
(+/-1.2)		106
13.7
(+/-0.9)		40.6
(+/-2.6)		49.5
(+/-2.7)
ssearch79
10.1
(+/-0.7)		66
3.9
(+/-0.1)		36
1.7
(+/-1.0)		85
11.2
(+/-1.1)		29.9
(+/-2.8)		38.5
(+/-3.0)
Superfamily93
10.9
(+/-0.6)		70
4.0
(+/-0.1)		44
2.2
(+/-1.1)		97
11.5
(+/-1.0)		36.9
(+/-2.7)		44.4
(+/-2.9)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 326813D-PSSM226
12.3
(+/-0.4)		181
4.2
(+/-0.1)		125
3.9
(+/-0.7)		232
13.1
(+/-0.6)		38.7
(+/-1.7)		48.7
(+/-1.8)
BLAST122
6.0
(+/-0.3)		87
3.2
(+/-0.1)		77
-1.2
(+/-1.0)		141
6.5
(+/-0.6)		24.3
(+/-1.7)		28.7
(+/-1.8)
FUGUE221
11.6
(+/-0.4)		171
4.3
(+/-0.1)		127
3.8
(+/-0.6)		239
13.2
(+/-0.6)		35.6
(+/-1.8)		45.2
(+/-1.9)
PSI-BLAST173
9.2
(+/-0.4)		130
3.6
(+/-0.1)		88
-1.4
(+/-1.0)		181
9.1
(+/-0.7)		31.8
(+/-1.7)		38.2
(+/-1.8)
SAMt99210
11.1
(+/-0.4)		164
4.0
(+/-0.1)		115
2.9
(+/-0.8)		218
12.2
(+/-0.6)		37.8
(+/-1.8)		45.6
(+/-1.9)
ssearch158
8.6
(+/-0.4)		130
3.7
(+/-0.1)		82
1.7
(+/-0.6)		175
10.0
(+/-0.7)		26.8
(+/-1.9)		34.5
(+/-2.0)

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