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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 835 266 method/index.html
3D-PSSM   548200method/3dpssm.html
BLAST   812262method/blast.html
FUGUE   649214method/fugue.html
Libellula   8139method/libellula.html
Prospect   13047method/prospect.html
PSI-BLAST   302132method/psiblast.html
SAMt99   354151method/samt99.html
ssearch   563200method/ssearch.html
Superfamily   306101method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 11513D-PSSM13
11.9
(+/-1.6)		10
4.0
(+/-0.3)		7
5.9
(+/-2.7)		12
11.1
(+/-2.4)		31.8
(+/-7.2)		41.9
(+/-7.9)
BLAST5
5.0
(+/-1.2)		4
2.9
(+/-0.3)		4
0.4
(+/-4.1)		5
4.4
(+/-2.3)		15.3
(+/-5.8)		18.0
(+/-6.3)
FUGUE12
11.9
(+/-1.9)		8
4.0
(+/-0.3)		9
5.6
(+/-2.2)		13
10.6
(+/-1.9)		30.5
(+/-6.9)		39.4
(+/-7.8)
Libellula11
12.2
(+/-2.2)		7
3.5
(+/-0.5)		10
10.8
(+/-2.8)		11
11.0
(+/-2.5)		34.4
(+/-7.8)		42.2
(+/-8.4)
Prospect10
9.9
(+/-1.9)		9
3.8
(+/-0.3)		8
4.7
(+/-2.3)		12
9.8
(+/-2.2)		27.1
(+/-7.4)		34.7
(+/-8.3)
PSI-BLAST7
7.1
(+/-1.8)		6
3.3
(+/-0.3)		3
-0.6
(+/-3.8)		8
6.3
(+/-2.4)		19.1
(+/-6.4)		24.3
(+/-7.0)
SAMt9911
11.2
(+/-2.2)		9
3.9
(+/-0.4)		8
4.7
(+/-2.8)		10
9.2
(+/-2.1)		28.5
(+/-7.3)		35.8
(+/-8.2)
ssearch7
8.2
(+/-1.8)		7
3.5
(+/-0.4)		4
1.7
(+/-2.2)		8
7.0
(+/-2.4)		19.2
(+/-6.9)		24.9
(+/-7.8)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 21013D-PSSM7
12.9
(+/-2.8)		6
4.0
(+/-0.4)		3
2.4
(+/-2.8)		7
11.2
(+/-2.3)		32.4
(+/-7.6)		39.2
(+/-9.1)
BLAST5
7.3
(+/-2.1)		4
3.0
(+/-0.4)		3
-0.9
(+/-4.4)		6
4.8
(+/-2.3)		15.2
(+/-5.7)		20.0
(+/-6.2)
FUGUE8
13.0
(+/-2.9)		6
4.3
(+/-0.4)		3
4.0
(+/-3.4)		8
10.9
(+/-2.1)		26.3
(+/-6.5)		35.3
(+/-7.5)
PSI-BLAST6
11.2
(+/-3.1)		4
3.6
(+/-0.5)		2
-2.0
(+/-3.4)		6
6.0
(+/-2.4)		20.8
(+/-5.6)		27.6
(+/-6.3)
SAMt997
10.7
(+/-2.8)		4
3.6
(+/-0.4)		2
-0.8
(+/-3.1)		7
7.8
(+/-2.4)		18.1
(+/-6.2)		24.1
(+/-6.7)
ssearch6
10.9
(+/-3.2)		5
3.5
(+/-0.6)		2
-0.0
(+/-1.9)		6
6.8
(+/-2.2)		10.8
(+/-3.9)		17.0
(+/-4.9)
Superfamily7
10.1
(+/-2.5)		6
3.8
(+/-0.3)		2
3.2
(+/-4.1)		7
7.6
(+/-2.3)		21.4
(+/-6.5)		26.0
(+/-7.2)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 34713D-PSSM35
11.1
(+/-1.0)		27
4.0
(+/-0.2)		23
5.5
(+/-1.6)		37
11.0
(+/-1.3)		37.0
(+/-4.3)		46.5
(+/-4.6)
BLAST17
5.5
(+/-0.8)		13
3.0
(+/-0.1)		16
1.2
(+/-2.4)		21
4.8
(+/-1.3)		21.1
(+/-3.9)		24.7
(+/-4.1)
FUGUE35
10.7
(+/-1.1)		25
4.1
(+/-0.2)		27
6.7
(+/-1.5)		40
10.8
(+/-1.1)		33.8
(+/-4.2)		43.0
(+/-4.6)
PSI-BLAST22
7.8
(+/-1.1)		17
3.2
(+/-0.2)		15
-1.3
(+/-2.7)		28
6.9
(+/-1.4)		26.9
(+/-4.1)		32.7
(+/-4.4)
SAMt9932
10.1
(+/-1.1)		23
3.8
(+/-0.2)		21
3.3
(+/-1.9)		33
9.1
(+/-1.2)		32.1
(+/-4.4)		39.1
(+/-4.6)
ssearch26
8.2
(+/-1.1)		20
3.5
(+/-0.2)		16
2.8
(+/-1.4)		29
8.0
(+/-1.3)		22.2
(+/-4.2)		28.8
(+/-4.6)

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