Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom

EVA summary for category threading, best of first 1 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 835 266 method/index.html
3D-PSSM   548200method/3dpssm.html
BLAST   812262method/blast.html
FUGUE   649214method/fugue.html
Libellula   8139method/libellula.html
Prospect   13047method/prospect.html
PSI-BLAST   302132method/psiblast.html
SAMt99   354151method/samt99.html
ssearch   563200method/ssearch.html
Superfamily   306101method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 11513D-PSSM11
9.4
(+/-1.7)		6
3.3
(+/-0.4)		6
3.4
(+/-2.6)		11
8.2
(+/-2.4)		23.4
(+/-6.9)		31.5
(+/-8.3)
BLAST5
4.5
(+/-1.3)		4
2.4
(+/-0.4)		3
-5.8
(+/-4.8)		5
2.7
(+/-1.9)		13.6
(+/-5.7)		16.0
(+/-6.2)
FUGUE10
9.8
(+/-1.7)		7
3.5
(+/-0.4)		8
1.0
(+/-3.7)		13
8.9
(+/-1.9)		21.7
(+/-6.1)		29.3
(+/-7.1)
Libellula10
9.7
(+/-1.9)		4
2.3
(+/-0.5)		9
7.2
(+/-2.8)		9
8.2
(+/-2.6)		23.1
(+/-7.0)		30.3
(+/-8.2)
Prospect10
9.0
(+/-1.7)		6
3.2
(+/-0.4)		6
3.3
(+/-2.3)		9
7.8
(+/-2.4)		25.7
(+/-7.5)		33.5
(+/-8.5)
PSI-BLAST6
6.6
(+/-1.8)		6
2.9
(+/-0.4)		3
-2.1
(+/-3.9)		7
5.9
(+/-2.4)		16.9
(+/-5.9)		21.9
(+/-6.7)
SAMt9911
10.0
(+/-1.8)		7
3.7
(+/-0.4)		8
2.0
(+/-2.5)		9
7.3
(+/-2.2)		24.0
(+/-7.1)		32.4
(+/-8.3)
ssearch7
7.7
(+/-1.8)		7
3.1
(+/-0.4)		3
0.3
(+/-1.9)		8
5.7
(+/-2.3)		18.0
(+/-6.8)		23.4
(+/-7.9)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 21013D-PSSM7
10.9
(+/-2.9)		4
3.3
(+/-0.5)		2
-0.2
(+/-2.1)		7
8.1
(+/-2.0)		23.1
(+/-5.8)		30.0
(+/-6.6)
BLAST5
6.9
(+/-2.1)		2
2.4
(+/-0.4)		3
-3.3
(+/-5.0)		6
4.6
(+/-2.3)		14.6
(+/-5.7)		19.3
(+/-6.2)
FUGUE6
11.1
(+/-2.9)		6
3.7
(+/-0.5)		2
2.3
(+/-3.5)		6
7.9
(+/-2.4)		23.2
(+/-6.8)		30.1
(+/-7.6)
PSI-BLAST6
10.6
(+/-3.2)		3
2.9
(+/-0.6)		2
-4.8
(+/-3.3)		6
4.6
(+/-2.0)		15.5
(+/-4.6)		23.3
(+/-6.2)
SAMt997
10.2
(+/-2.8)		2
3.1
(+/-0.4)		2
-1.5
(+/-2.6)		7
6.2
(+/-2.2)		14.9
(+/-4.8)		21.7
(+/-6.1)
ssearch5
9.4
(+/-3.2)		4
2.9
(+/-0.5)		2
-0.6
(+/-2.2)		5
5.2
(+/-2.2)		9.7
(+/-4.1)		15.0
(+/-5.3)
Superfamily7
9.7
(+/-2.6)		5
3.5
(+/-0.4)		2
-0.8
(+/-3.6)		6
6.9
(+/-2.2)		17.2
(+/-6.5)		21.3
(+/-7.4)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 34713D-PSSM31
9.0
(+/-1.0)		18
3.3
(+/-0.2)		17
2.9
(+/-1.6)		34
8.6
(+/-1.3)		28.8
(+/-4.2)		36.3
(+/-4.6)
BLAST17
5.2
(+/-0.8)		10
2.5
(+/-0.2)		15
-2.3
(+/-2.7)		21
3.9
(+/-1.2)		19.8
(+/-3.9)		23.3
(+/-4.2)
FUGUE28
8.5
(+/-1.0)		22
3.5
(+/-0.2)		22
2.1
(+/-2.4)		34
8.2
(+/-1.2)		26.2
(+/-4.2)		33.5
(+/-4.6)
PSI-BLAST20
7.3
(+/-1.1)		15
2.9
(+/-0.2)		13
-3.8
(+/-2.7)		25
5.4
(+/-1.4)		22.8
(+/-3.9)		29.1
(+/-4.3)
SAMt9931
9.2
(+/-1.0)		18
3.5
(+/-0.2)		21
1.9
(+/-1.8)		32
7.6
(+/-1.2)		28.2
(+/-4.2)		36.6
(+/-4.7)
ssearch24
7.5
(+/-1.1)		19
3.0
(+/-0.2)		15
1.7
(+/-1.4)		25
5.7
(+/-1.4)		19.6
(+/-4.1)		25.9
(+/-4.5)

Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top