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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 789 251 method/index.html
3D-PSSM   523195method/3dpssm.html
BLAST   575217method/blast.html
FUGUE   442176method/fugue.html
Libellula   8139method/libellula.html
Prospect   12246method/prospect.html
PSI-BLAST   609226method/psiblast.html
SAMt99   351148method/samt99.html
ssearch   439188method/ssearch.html
Superfamily   22187method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 12013D-PSSM16
12.8
(+/-1.7)		11
3.6
(+/-0.3)		13
6.8
(+/-2.2)		16
12.0
(+/-2.0)		35.4
(+/-6.3)		44.1
(+/-7.0)
BLAST8
6.1
(+/-1.2)		5
3.1
(+/-0.3)		7
1.7
(+/-3.3)		9
5.7
(+/-1.9)		17.7
(+/-4.8)		21.0
(+/-5.1)
FUGUE17
12.9
(+/-1.6)		13
3.9
(+/-0.2)		14
7.4
(+/-1.9)		18
11.8
(+/-1.7)		30.9
(+/-5.9)		40.5
(+/-6.9)
Libellula15
13.3
(+/-2.0)		8
3.5
(+/-0.3)		11
8.3
(+/-2.6)		16
11.8
(+/-1.9)		34.6
(+/-6.6)		42.7
(+/-7.1)
Prospect14
11.3
(+/-1.8)		12
3.6
(+/-0.3)		12
7.4
(+/-2.3)		16
10.8
(+/-1.8)		28.4
(+/-6.0)		36.8
(+/-6.6)
PSI-BLAST11
9.3
(+/-1.9)		7
3.5
(+/-0.2)		7
1.6
(+/-3.6)		12
7.9
(+/-2.3)		25.0
(+/-5.7)		29.8
(+/-6.1)
SAMt9913
11.2
(+/-2.2)		6
3.2
(+/-0.4)		10
4.7
(+/-2.6)		15
9.6
(+/-1.9)		30.8
(+/-6.7)		37.0
(+/-7.4)
ssearch8
8.4
(+/-1.8)		5
3.3
(+/-0.2)		7
1.7
(+/-1.9)		13
7.7
(+/-2.1)		20.0
(+/-5.9)		26.4
(+/-6.7)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 24813D-PSSM40
10.5
(+/-0.8)		25
3.6
(+/-0.2)		28
6.4
(+/-2.1)		41
14.3
(+/-1.7)		46.2
(+/-3.7)		55.8
(+/-3.8)
BLAST26
6.3
(+/-0.6)		21
3.3
(+/-0.2)		20
2.1
(+/-3.0)		35
9.7
(+/-1.8)		33.7
(+/-3.9)		39.8
(+/-4.1)
FUGUE39
9.9
(+/-0.7)		24
3.7
(+/-0.2)		28
6.4
(+/-1.9)		45
14.9
(+/-1.5)		44.3
(+/-4.0)		54.7
(+/-4.0)
PSI-BLAST31
7.9
(+/-0.8)		18
3.4
(+/-0.2)		23
0.3
(+/-2.5)		34
10.2
(+/-1.9)		36.6
(+/-3.9)		44.9
(+/-3.8)
SAMt9938
9.6
(+/-0.8)		25
3.6
(+/-0.2)		27
6.6
(+/-2.2)		43
15.1
(+/-1.6)		44.1
(+/-4.2)		53.1
(+/-4.1)
ssearch32
8.2
(+/-0.8)		25
3.5
(+/-0.2)		22
4.0
(+/-2.0)		37
12.7
(+/-1.9)		36.1
(+/-4.5)		45.9
(+/-4.6)
Superfamily33
8.3
(+/-0.7)		19
3.3
(+/-0.2)		24
6.1
(+/-2.0)		38
12.1
(+/-1.9)		39.9
(+/-4.5)		47.8
(+/-4.5)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 312013D-PSSM97
11.2
(+/-0.6)		54
3.5
(+/-0.1)		59
4.1
(+/-1.1)		101
12.9
(+/-1.0)		38.1
(+/-2.6)		47.4
(+/-2.7)
BLAST60
6.4
(+/-0.5)		42
3.2
(+/-0.1)		40
-0.3
(+/-1.5)		69
7.0
(+/-1.0)		25.5
(+/-2.4)		30.4
(+/-2.6)
FUGUE99
10.9
(+/-0.6)		61
3.7
(+/-0.1)		60
4.2
(+/-1.0)		107
13.4
(+/-0.9)		36.7
(+/-2.6)		46.6
(+/-2.8)
PSI-BLAST74
8.7
(+/-0.6)		48
3.4
(+/-0.1)		43
-1.4
(+/-1.5)		82
9.3
(+/-1.1)		32.3
(+/-2.5)		39.1
(+/-2.6)
SAMt9990
10.4
(+/-0.7)		55
3.5
(+/-0.1)		52
2.8
(+/-1.3)		98
12.3
(+/-1.0)		36.9
(+/-2.8)		44.7
(+/-2.9)
ssearch72
8.5
(+/-0.6)		48
3.4
(+/-0.1)		40
1.7
(+/-1.0)		80
10.1
(+/-1.1)		28.2
(+/-2.8)		36.1
(+/-3.0)

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