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EVA summary for category threading, best of first 5 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 756 243 method/index.html
3D-PSSM   508187method/3dpssm.html
BLAST   543209method/blast.html
FUGUE   411161method/fugue.html
Libellula   7435method/libellula.html
LOOPP   483184method/loopp.html
Prospect   10435method/prospect.html
PSI-BLAST   478206method/psiblast.html
SAMt99   339141method/samt99.html
ssearch   318156method/ssearch.html
Superfamily   22187method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11913D-PSSM15
12.9
(+/-1.8)		11
3.7
(+/-0.3)		12
6.1
(+/-2.2)		15
11.8
(+/-2.1)		35.0
(+/-6.6)		43.2
(+/-7.3)		46.1
(+/-6.4)		51.7
(+/-6.5)		85.1
(+/-3.5)
BLAST7
6.1
(+/-1.3)		4
3.1
(+/-0.3)		6
0.3
(+/-3.2)		8
5.2
(+/-2.0)		16.4
(+/-4.9)		19.7
(+/-5.2)		22.1
(+/-4.7)		25.3
(+/-4.6)		45.0
(+/-5.1)
FUGUE16
13.0
(+/-1.7)		12
3.9
(+/-0.2)		13
6.7
(+/-1.9)		17
11.6
(+/-1.7)		30.0
(+/-6.1)		39.4
(+/-7.2)		45.2
(+/-5.3)		53.0
(+/-5.9)		92.9
(+/-2.1)
Libellula14
13.4
(+/-2.1)		7
3.4
(+/-0.3)		10
7.3
(+/-2.5)		15
11.5
(+/-2.0)		33.2
(+/-6.8)		41.6
(+/-7.4)		45.8
(+/-6.0)		52.0
(+/-6.1)		94.8
(+/-2.8)
LOOPP7
5.9
(+/-1.5)		3
3.0
(+/-0.3)		8
2.0
(+/-1.5)		8
4.3
(+/-1.5)		10.3
(+/-3.9)		16.4
(+/-4.6)		25.8
(+/-5.0)		32.2
(+/-5.2)		96.5
(+/-1.4)
Prospect13
11.4
(+/-1.9)		12
3.7
(+/-0.3)		11
6.5
(+/-2.2)		15
10.5
(+/-1.9)		27.0
(+/-6.2)		35.7
(+/-6.9)		42.7
(+/-6.1)		48.7
(+/-6.2)		131.3
(+/-14.6)
PSI-BLAST10
9.4
(+/-2.0)		6
3.5
(+/-0.3)		6
0.1
(+/-3.5)		11
7.5
(+/-2.4)		24.0
(+/-5.9)		29.0
(+/-6.4)		30.9
(+/-6.2)		34.1
(+/-6.4)		51.8
(+/-7.2)
SAMt9912
11.2
(+/-2.3)		6
3.2
(+/-0.4)		9
3.8
(+/-2.6)		14
9.1
(+/-2.0)		29.1
(+/-6.8)		35.3
(+/-7.6)		37.9
(+/-6.8)		42.7
(+/-7.0)		69.8
(+/-5.7)
ssearch7
8.3
(+/-1.9)		5
3.4
(+/-0.2)		6
0.8
(+/-1.7)		12
7.3
(+/-2.2)		18.4
(+/-6.0)		24.4
(+/-6.8)		38.0
(+/-6.1)		43.6
(+/-5.9)		92.0
(+/-2.5)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 24413D-PSSM36
10.5
(+/-0.9)		23
3.6
(+/-0.2)		25
6.2
(+/-2.2)		37
14.9
(+/-1.8)		46.8
(+/-3.9)		56.0
(+/-3.9)		51.8
(+/-4.3)		58.0
(+/-4.3)		90.4
(+/-1.3)
BLAST23
6.3
(+/-0.7)		19
3.3
(+/-0.2)		18
2.0
(+/-3.2)		31
10.0
(+/-1.9)		34.4
(+/-4.2)		40.2
(+/-4.3)		40.5
(+/-4.1)		43.8
(+/-4.1)		58.0
(+/-3.8)
FUGUE35
9.8
(+/-0.8)		21
3.6
(+/-0.2)		25
6.4
(+/-2.0)		41
15.5
(+/-1.6)		44.9
(+/-4.2)		54.9
(+/-4.2)		56.6
(+/-3.6)		61.8
(+/-3.5)		95.7
(+/-1.3)
LOOPP21
6.3
(+/-0.7)		10
2.9
(+/-0.2)		16
1.4
(+/-2.0)		26
9.0
(+/-2.0)		30.2
(+/-4.6)		37.4
(+/-4.8)		41.6
(+/-4.0)		47.6
(+/-3.9)		95.4
(+/-0.9)
PSI-BLAST28
8.0
(+/-0.9)		17
3.4
(+/-0.2)		21
-0.2
(+/-2.6)		31
10.7
(+/-2.1)		37.8
(+/-4.1)		45.8
(+/-4.0)		47.6
(+/-3.9)		51.8
(+/-3.9)		66.4
(+/-3.8)
SAMt9934
9.7
(+/-0.9)		22
3.6
(+/-0.2)		24
6.0
(+/-2.3)		39
15.5
(+/-1.8)		44.3
(+/-4.5)		53.0
(+/-4.4)		54.8
(+/-4.2)		59.2
(+/-4.2)		83.5
(+/-3.0)
ssearch28
7.9
(+/-0.9)		22
3.5
(+/-0.2)		19
3.7
(+/-2.1)		33
13.1
(+/-2.1)		35.9
(+/-4.8)		45.4
(+/-4.9)		52.9
(+/-4.3)		57.2
(+/-4.2)		92.4
(+/-1.6)
Superfamily30
8.3
(+/-0.8)		17
3.3
(+/-0.2)		21
5.8
(+/-2.1)		34
12.2
(+/-2.1)		39.7
(+/-4.7)		47.6
(+/-4.7)		51.0
(+/-4.0)		57.1
(+/-3.7)		169.5
(+/-11.9)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 39713D-PSSM76
11.0
(+/-0.7)		44
3.5
(+/-0.1)		52
5.0
(+/-1.2)		81
13.1
(+/-1.1)		38.0
(+/-2.9)		47.0
(+/-3.0)		46.0
(+/-2.9)		52.1
(+/-2.9)		88.4
(+/-1.1)
BLAST45
6.3
(+/-0.5)		34
3.2
(+/-0.1)		35
0.4
(+/-1.7)		55
7.1
(+/-1.1)		25.3
(+/-2.8)		30.1
(+/-2.9)		32.8
(+/-2.6)		36.2
(+/-2.6)		52.6
(+/-2.5)
FUGUE78
10.8
(+/-0.7)		49
3.7
(+/-0.1)		51
5.0
(+/-1.1)		86
13.6
(+/-1.0)		36.5
(+/-3.0)		46.1
(+/-3.2)		50.4
(+/-2.5)		56.3
(+/-2.6)		95.1
(+/-0.8)
LOOPP38
5.8
(+/-0.5)		18
3.0
(+/-0.1)		32
0.3
(+/-1.0)		53
6.1
(+/-1.0)		18.6
(+/-2.6)		25.6
(+/-2.9)		33.0
(+/-2.4)		39.1
(+/-2.4)		95.5
(+/-0.6)
PSI-BLAST56
8.5
(+/-0.7)		34
3.3
(+/-0.1)		36
-0.8
(+/-1.6)		64
8.8
(+/-1.2)		31.1
(+/-2.8)		37.9
(+/-2.9)		38.9
(+/-2.9)		42.5
(+/-2.9)		58.0
(+/-2.8)
SAMt9970
10.1
(+/-0.7)		42
3.4
(+/-0.1)		44
3.2
(+/-1.4)		78
12.1
(+/-1.1)		35.6
(+/-3.1)		43.3
(+/-3.2)		45.6
(+/-3.0)		50.5
(+/-3.0)		75.6
(+/-2.5)
ssearch54
8.4
(+/-0.7)		41
3.5
(+/-0.1)		33
1.9
(+/-1.1)		64
10.0
(+/-1.3)		27.4
(+/-3.2)		35.1
(+/-3.4)		45.3
(+/-2.9)		50.3
(+/-2.8)		91.5
(+/-1.1)

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