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EVA summary for category threading, best of first 5 hits (1)

Contents

Local link to information about methods evaluated
All prediction results for threading

Common subset 1
Common subset 2
Common subset 3

All prediction results in ASCII (raw text)
Explanations of measures for prediction accuracy
For older versions of the results

About threading prediction methods evaluated

Method		Nprot	Nweek	Detailed results for method
ALL		1277	241	method/index.html

3D-PSSM		803	182	method/3dpssm.html
BLAST		457	171	method/blast.html
FUGUE		561	153	method/fugue.html
Libellula		169	37	method/libellula.html
LOOPP		655	189	method/loopp.html
Prospect		166	33	method/prospect.html
SAMt99		534	136	method/samt99.html
ssearch		161	69	method/ssearch.html
Superfamily		234	79	method/superfamily.html

Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
Detail level 1 (this file) as ASCII

(...) contain standard error of a mean

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	32	1	3D-PSSM	26	20	22	25	41.8 (+/-4.9)
			BLAST	15	5	9	15	19.6 (+/-3.6)
			FUGUE	28	22	21	29	35.7 (+/-4.7)
			Libellula	26	14	16	27	37.8 (+/-4.9)
			LOOPP	13	7	16	17	10.3 (+/-2.8)
			Prospect	23	20	18	24	29.3 (+/-4.6)
			SAMt99	24	16	18	27	39.8 (+/-5.5)
			ssearch	15	8	12	22	22.6 (+/-4.6)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	54	1	3D-PSSM	42	25	26	46	40.0 (+/-3.6)
			BLAST	26	19	21	31	27.9 (+/-3.5)
			FUGUE	42	21	31	46	37.3 (+/-3.7)
			LOOPP	24	8	16	28	21.7 (+/-3.7)
			SAMt99	41	29	25	45	37.7 (+/-3.9)
			ssearch	33	24	21	37	27.6 (+/-4.0)
			Superfamily	36	20	19	37	31.7 (+/-4.1)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	159	1	3D-PSSM	131	74	85	136	38.6 (+/-2.1)
			BLAST	73	41	54	88	22.2 (+/-1.9)
			FUGUE	133	79	89	140	35.2 (+/-2.2)
			LOOPP	62	23	47	90	14.5 (+/-1.8)
			SAMt99	124	78	74	134	36.5 (+/-2.3)
			ssearch	96	65	57	109	25.1 (+/-2.2)

Last update: Nov 21, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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