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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 1277 241 method/index.html
3D-PSSM   803182method/3dpssm.html
BLAST   457171method/blast.html
FUGUE   561153method/fugue.html
Libellula   16937method/libellula.html
LOOPP   655189method/loopp.html
Prospect   16633method/prospect.html
SAMt99   534136method/samt99.html
ssearch   16169method/ssearch.html
Superfamily   23479method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 13213D-PSSM26
15.4
(+/-1.6)		20
3.9
(+/-0.2)		22
7.2
(+/-1.6)		25
13.6
(+/-1.6)		41.8
(+/-4.9)		50.4
(+/-5.4)
BLAST15
7.7
(+/-1.1)		5
3.0
(+/-0.2)		9
-0.0
(+/-2.3)		15
6.3
(+/-1.5)		19.6
(+/-3.6)		23.1
(+/-3.9)
FUGUE28
15.3
(+/-1.5)		22
4.1
(+/-0.2)		21
6.9
(+/-1.4)		29
13.5
(+/-1.4)		35.7
(+/-4.7)		46.3
(+/-5.6)
Libellula26
15.4
(+/-1.6)		14
3.6
(+/-0.3)		16
6.7
(+/-1.9)		27
12.7
(+/-1.4)		37.8
(+/-4.9)		47.1
(+/-5.5)
LOOPP13
7.7
(+/-1.4)		7
3.1
(+/-0.2)		16
2.6
(+/-1.1)		17
5.4
(+/-1.2)		10.3
(+/-2.8)		15.9
(+/-3.2)
Prospect23
12.7
(+/-1.6)		20
3.7
(+/-0.3)		18
6.6
(+/-1.7)		24
10.5
(+/-1.4)		29.3
(+/-4.6)		37.4
(+/-5.1)
SAMt9924
14.6
(+/-1.8)		16
3.8
(+/-0.3)		18
6.4
(+/-2.0)		27
12.4
(+/-1.6)		39.8
(+/-5.5)		46.7
(+/-6.0)
ssearch15
10.8
(+/-1.7)		8
3.4
(+/-0.2)		12
1.6
(+/-1.2)		22
9.0
(+/-1.7)		22.6
(+/-4.6)		30.2
(+/-5.3)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 25413D-PSSM42
11.3
(+/-0.8)		25
3.6
(+/-0.2)		26
5.2
(+/-1.8)		46
13.8
(+/-1.5)		40.0
(+/-3.6)		50.3
(+/-3.7)
BLAST26
6.0
(+/-0.6)		19
3.2
(+/-0.2)		21
-0.4
(+/-2.6)		31
6.8
(+/-1.5)		27.9
(+/-3.5)		33.5
(+/-3.8)
FUGUE42
10.2
(+/-0.7)		21
3.5
(+/-0.1)		31
6.3
(+/-1.6)		46
13.4
(+/-1.3)		37.3
(+/-3.7)		47.8
(+/-4.0)
LOOPP24
6.0
(+/-0.7)		8
2.9
(+/-0.1)		16
-0.1
(+/-1.4)		28
5.7
(+/-1.5)		21.7
(+/-3.7)		27.8
(+/-4.0)
SAMt9941
10.3
(+/-0.8)		29
3.6
(+/-0.2)		25
3.9
(+/-2.0)		45
13.2
(+/-1.5)		37.7
(+/-3.9)		48.2
(+/-3.9)
ssearch33
7.9
(+/-0.8)		24
3.5
(+/-0.2)		21
2.7
(+/-1.7)		37
10.0
(+/-1.7)		27.6
(+/-4.0)		37.3
(+/-4.2)
Superfamily36
8.4
(+/-0.7)		20
3.2
(+/-0.2)		19
4.6
(+/-1.7)		37
9.8
(+/-1.6)		31.7
(+/-4.1)		39.9
(+/-4.3)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 315913D-PSSM131
13.2
(+/-0.6)		74
3.6
(+/-0.1)		85
4.7
(+/-0.8)		136
13.0
(+/-0.8)		38.6
(+/-2.1)		48.2
(+/-2.2)
BLAST73
6.5
(+/-0.4)		41
3.1
(+/-0.1)		54
-0.7
(+/-1.3)		88
6.2
(+/-0.8)		22.2
(+/-1.9)		26.7
(+/-2.1)
FUGUE133
12.6
(+/-0.6)		79
3.7
(+/-0.1)		89
4.9
(+/-0.7)		140
13.2
(+/-0.7)		35.2
(+/-2.2)		45.5
(+/-2.4)
LOOPP62
6.2
(+/-0.5)		23
3.0
(+/-0.1)		47
0.1
(+/-0.6)		90
5.5
(+/-0.7)		14.5
(+/-1.8)		20.9
(+/-2.0)
SAMt99124
12.0
(+/-0.6)		78
3.6
(+/-0.1)		74
3.3
(+/-1.0)		134
12.2
(+/-0.8)		36.5
(+/-2.3)		44.7
(+/-2.5)
ssearch96
9.6
(+/-0.6)		65
3.5
(+/-0.1)		57
2.0
(+/-0.8)		109
9.8
(+/-0.9)		25.1
(+/-2.2)		33.3
(+/-2.4)

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