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EVA summary for category threading, best of first 5 hits (1)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 1273 241 method/index.html
3D-PSSM   786182method/3dpssm.html
BLAST   457171method/blast.html
FUGUE   561153method/fugue.html
Libellula   16937method/libellula.html
LOOPP   655189method/loopp.html
Prospect   16633method/prospect.html
SAMt99   534136method/samt99.html
Superfamily   23479method/superfamily.html

 


Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 13213D-PSSM26
20
22
25
41.8
(+/-4.9)
BLAST15
5
9
15
19.6
(+/-3.6)
FUGUE28
22
21
29
35.7
(+/-4.7)
Libellula26
14
16
27
37.8
(+/-4.9)
LOOPP13
7
16
17
10.3
(+/-2.8)
Prospect23
20
18
24
29.3
(+/-4.6)
SAMt9924
16
18
27
39.8
(+/-5.5)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 25513D-PSSM43
26
26
47
40.7
(+/-3.6)
BLAST27
19
21
32
28.3
(+/-3.4)
FUGUE43
22
31
47
37.9
(+/-3.7)
LOOPP25
8
16
29
22.1
(+/-3.6)
SAMt9942
30
25
46
38.0
(+/-3.8)
Superfamily37
21
19
38
31.9
(+/-4.0)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 316013D-PSSM132
75
85
137
38.8
(+/-2.1)
BLAST74
41
54
89
22.4
(+/-1.9)
FUGUE134
80
89
141
35.4
(+/-2.2)
LOOPP63
23
47
91
14.7
(+/-1.8)
SAMt99125
79
74
135
36.6
(+/-2.3)

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