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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 1273 241 method/index.html
3D-PSSM   786182method/3dpssm.html
BLAST   457171method/blast.html
FUGUE   561153method/fugue.html
Libellula   16937method/libellula.html
LOOPP   655189method/loopp.html
Prospect   16633method/prospect.html
SAMt99   534136method/samt99.html
Superfamily   23479method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 13213D-PSSM26
15.4
(+/-1.6)		20
3.9
(+/-0.2)		22
7.2
(+/-1.6)		25
13.6
(+/-1.6)		41.8
(+/-4.9)		50.4
(+/-5.4)
BLAST15
7.7
(+/-1.1)		5
3.0
(+/-0.2)		9
-0.0
(+/-2.3)		15
6.3
(+/-1.5)		19.6
(+/-3.6)		23.1
(+/-3.9)
FUGUE28
15.3
(+/-1.5)		22
4.1
(+/-0.2)		21
6.9
(+/-1.4)		29
13.5
(+/-1.4)		35.7
(+/-4.7)		46.3
(+/-5.6)
Libellula26
15.4
(+/-1.6)		14
3.6
(+/-0.3)		16
6.7
(+/-1.9)		27
12.7
(+/-1.4)		37.8
(+/-4.9)		47.1
(+/-5.5)
LOOPP13
7.7
(+/-1.4)		7
3.1
(+/-0.2)		16
2.6
(+/-1.1)		17
5.4
(+/-1.2)		10.3
(+/-2.8)		15.9
(+/-3.2)
Prospect23
12.7
(+/-1.6)		20
3.7
(+/-0.3)		18
6.6
(+/-1.7)		24
10.5
(+/-1.4)		29.3
(+/-4.6)		37.4
(+/-5.1)
SAMt9924
14.6
(+/-1.8)		16
3.8
(+/-0.3)		18
6.4
(+/-2.0)		27
12.4
(+/-1.6)		39.8
(+/-5.5)		46.7
(+/-6.0)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 25513D-PSSM43
11.3
(+/-0.8)		26
3.7
(+/-0.1)		26
5.0
(+/-1.8)		47
13.8
(+/-1.5)		40.7
(+/-3.6)		50.9
(+/-3.7)
BLAST27
6.0
(+/-0.6)		19
3.2
(+/-0.2)		21
-0.4
(+/-2.6)		32
6.9
(+/-1.5)		28.3
(+/-3.4)		34.0
(+/-3.8)
FUGUE43
10.2
(+/-0.7)		22
3.6
(+/-0.1)		31
6.2
(+/-1.6)		47
13.5
(+/-1.3)		37.9
(+/-3.7)		48.4
(+/-4.0)
LOOPP25
6.0
(+/-0.6)		8
2.9
(+/-0.1)		16
-0.1
(+/-1.4)		29
5.7
(+/-1.5)		22.1
(+/-3.6)		28.4
(+/-4.0)
SAMt9942
10.3
(+/-0.8)		30
3.6
(+/-0.2)		25
3.8
(+/-2.0)		46
13.1
(+/-1.5)		38.0
(+/-3.8)		48.6
(+/-3.9)
Superfamily37
8.4
(+/-0.7)		21
3.2
(+/-0.2)		19
4.5
(+/-1.7)		38
9.9
(+/-1.6)		31.9
(+/-4.0)		40.2
(+/-4.2)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 316013D-PSSM132
13.2
(+/-0.6)		75
3.6
(+/-0.1)		85
4.7
(+/-0.8)		137
13.0
(+/-0.8)		38.8
(+/-2.1)		48.4
(+/-2.2)
BLAST74
6.5
(+/-0.4)		41
3.1
(+/-0.1)		54
-0.7
(+/-1.3)		89
6.2
(+/-0.8)		22.4
(+/-1.9)		26.9
(+/-2.1)
FUGUE134
12.6
(+/-0.6)		80
3.7
(+/-0.1)		89
4.9
(+/-0.7)		141
13.2
(+/-0.7)		35.4
(+/-2.2)		45.7
(+/-2.4)
LOOPP63
6.3
(+/-0.5)		23
3.0
(+/-0.1)		47
0.1
(+/-0.6)		91
5.6
(+/-0.7)		14.7
(+/-1.8)		21.2
(+/-2.0)
SAMt99125
12.0
(+/-0.6)		79
3.6
(+/-0.1)		74
3.2
(+/-1.0)		135
12.2
(+/-0.8)		36.6
(+/-2.3)		44.9
(+/-2.4)

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