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Class PeptElt 

java.lang.Object
   |
   +----PeptElt
public class PeptElt
extends Object

Variable Index

o Fdx1
Fdx1 and Fdx2 define respectively the left and the right mass margin we get due to a mistake made by a spectrometer
o Fdx2
o FIntensity
Relative intensity of a Peptide after a spectrometer digestion (relative to Carbon-12 (? not very sure))
o FMass
o FMc
o FMcDesc
o FPosition
o FSequence

Constructor Index

o PeptElt()
void constructor for vectorisation and listing
o PeptElt(float, float, float, float, int, String, String, String)
constructing a peptide with all information, when some information should be omitted, use "?" for string values and 0 for integer or float values

Method Index

o getDx1()
o getDx2()
o getIntensity()
o getMass()
o getMc()
o getMcDesc()
o getPosition()
o getSequence()
o setDx1(float)
o setDx2(float)
o setIntensity(float)
o setMass(float)
o setMc(int)
number of missed cleavage sites for the current Peptide
o setMcDesc(String)
Missed Cleavage sites resulting from a non-division of two Peptides (typically returned by PeptIdent at www.expasy.ch) something of a form: NAME:VALUE
o setPosition(String)
position of a peptide in a protein sequence something of a form "456-789"
o setSequence(String)
sequence of the peptide, something of a form AAFFEEBB

Variables

o FMass 
 private float FMass
o FIntensity 
 private float FIntensity
Relative intensity of a Peptide after a spectrometer digestion (relative to Carbon-12 (? not very sure))

o Fdx1 
 private float Fdx1
Fdx1 and Fdx2 define respectively the left and the right mass margin we get due to a mistake made by a spectrometer

o Fdx2 
 private float Fdx2
o FMcDesc 
 private String FMcDesc
o FMc 
 private int FMc
o FPosition 
 private String FPosition
o FSequence 
 private String FSequence

Constructors

o PeptElt 
 PeptElt(float mass,
         float intensity,
         float dx1,
         float dx2,
         int Mc,
         String McDesc,
         String Position,
         String Sequence)
constructing a peptide with all information, when some information should be omitted, use "?" for string values and 0 for integer or float values

o PeptElt 
 PeptElt()
void constructor for vectorisation and listing

Methods

o setMass 
 public boolean setMass(float Value)
o getMass 
 public float getMass()
o setIntensity 
 public boolean setIntensity(float Value)
o getIntensity 
 public float getIntensity()
o setDx1 
 public boolean setDx1(float Value)
o getDx1 
 public float getDx1()
o setDx2 
 public boolean setDx2(float Value)
o getDx2 
 public float getDx2()
o setMcDesc 
 public boolean setMcDesc(String Value)
Missed Cleavage sites resulting from a non-division of two Peptides (typically returned by PeptIdent at www.expasy.ch) something of a form: NAME:VALUE

o getMcDesc 
 public String getMcDesc()
o setMc 
 public boolean setMc(int Value)
number of missed cleavage sites for the current Peptide

o getMc 
 public int getMc()
o setPosition 
 public boolean setPosition(String Value)
position of a peptide in a protein sequence something of a form "456-789"

o getPosition 
 public String getPosition()
o setSequence 
 public boolean setSequence(String Value)
sequence of the peptide, something of a form AAFFEEBB

o getSequence 
 public String getSequence()
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