FFAS03 result: public vs. PDB0407
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Query: (07/04/07)
Psi-Blast: psi-nr85  ncbi     FFAS03 vs.PDB0407     PDB-Blast vs.PDB0407     Blast vs.PDB0407 
FFAS03 scores below -9.5 usually mean significant similarity (less than 3% of false positives)
This master-slave alignment does not show gaps in the query sequence.
Please, use ali links, to see full alignments between query and template sequences.
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# Score Template Psi-Blast/align/model Result vs. %idFirst MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPATPLITVSNHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGAEFFQAENEGKGVLDTGRHMPGAGKRREKGDGVYQKGMDFILEKLNHGDWVHIFPEGKVNMSSEFLRFKWGIGRLIAECHLNPIILPLWHVGMNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQPGRLast
1 -49.300 1k30_A mol:protein length:368 glycerol-3-phosphate acyltransferase  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  15  109......................................FGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAE--NTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPEL-----------------TETKRKANTRSLKEMALLLRGGQLIWIAPSGGRDRPDPSTPFDASMRRLIQHSDVPGHLFPLALLCHDIMPPPSQEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQG...... 354
2 -7.100 2e0k_A mol:protein length:259 Precorrin-2 C20-methyltransferase  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  12  1........................................................MNNQGSIISVSLGPGDPGLITVKAL------------------------------QLREADVIYYPGTVSASGLKEFDLDPSKLRGMLVPMSRSRGAAEASYAANYASMAEEVQAGRRVAVVSVGDGGFYSTASA----IIERARRDGLDCSMTP----GIPAFI------------AAGSAAGMPLALQSDSVLVLAQIDEIGELERALVTHSTVVVMKLSTVRDELVSFLERY. 195
3 -5.640 1q3k_A mol:protein length:259 creatininase  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  10  1.......................................................................................................................................................SKSVFVGELTWKEYEARVAAGDCVLMLPVGALEQHGHHMCMNVDVLLPRVAERIGALVLPGLQYGYKS--QQKSGGGNHFPGTTSL----------------DGATLTGTVQDIIRELARHGVRRL............... 113
4 -5.630 1khc_A mol:protein length:147 DNA cytosine-5 methyltransferase 3B2  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  7  1....................................................................................................................................................................................GDSTEYQDDKEFGIGDLVWGKIKGFS----PAMVVSWKATSKRQAM-----PGMRWVQW-SADKLVALGLFSQHFNLATFNKLVSYRKAMYHTLEKARVRAGKTFSSSPGES 113
5 -5.580 1gmu_A mol:protein length:143 UREE  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  12  21...........................................................................................................................................................PIDVRVKSRVKVTLNDGRDAGLLPRGLLLRGGDVLSNEEGTEFVQVIA-ADEEVSVVRCDDPFMLA------------KACYALGNPLQIMP------------GELRYHHDHVLDDMLRQFGLTVTFGQLPFEPE. 135
6 -5.550 1mec_3 mol:protein length:231 MENGO VIRUS COAT PROTEIN (SUBUNIT VP1)  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  8  112.................................................................................................................................................................FVFTGTAMMKGKFLIAYPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFVPFISPTHFRMVGTDQANITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSPQ............. 231
7 -5.520 1gmv_A mol:protein length:143 UREE  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  12  21...........................................................................................................................................................PIDVRVKSRVKVTLNDGRDAGLLPRGLLLRGGDVLSNEEGTEFVQVIA-ADEEVSVVRCDDPFMLA------------KACYHLGNPLQIMP------------GELRYHADHVLDDMLRQFGLTVTFGQLPFEPE. 135
8 -5.460 1j2t_A mol:protein length:260 creatinine amidohydrolase  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  8  11................................................................................................................................................................TWKEYEARVAAGDCVLMLPVGALEQHGHHMCMNVDVLLPRVAERIGALVMPGLQYGYKS--QQKSGGGNHFPGTTSL----------------DGATLTGTVQDIIRELARHGARRL............... 114
9 -5.450 2ar1_A mol:protein length:172 hypothetical protein  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  6  1......................................................................................................................MAMSRKRVRAEDIHYWLLKSEPHKFSIDDLAKQKTSDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPG-------AGLAEVVRLAYDD----FTALDKTSEYFDPKATKEKNPWKMVDVKWDTVLTLHELKSRRELQKMALFTQRRLSVQPVSASILRMNEEQQR......... 165
10 -5.420 1tme_3 mol:protein length:236 THEILER`S MURINE ENCEPHALOMYELITIS VIRUS (SUB  psi-nr85 ncbi ali model scwrl  COG0407 JCSG0407 PDB0407 PfamA210 SCOP171  6  113.................................................................................................................................................................FVFTGAAMVKGKFLIAYPPGAGKPTTRDQAMQATYAIWDLGLNSSFVFAPFISPTHYRQTSYTSATIASVDGWVTVWQLTPLTYPSGTPVNSDILTLVSAGDDFTLRMPISPTKWVPQGSDN......... 236


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