SP4 Prediction Result
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SP4 Report
Your input sequence:
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> test target ID
MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPATPLITVSNHQ
SCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGAEFFQAENEGKGVLDT
GRHMPGAGKRREKGDGVYQKGMDFILEKLNHGDWVHIFPEGKVNMSSEFLRFKWGIGRLIAECHLNPIIL
PLWHVGMNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQ
AEQLHNHLQPGR
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TOP 10 MATCHES:
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RANK TEMPLATE ZSCORE SEQ ID ALIGNMENT MODEL
1 1k30a 8.71 14% [ALIGNMENT] [MODEL]
2 2g5fa 5.02 8% [ALIGNMENT] -------
3 1mrza 4.64 8% [ALIGNMENT] -------
4 1g8pa 4.47 5% [ALIGNMENT] -------
5 1z2ia 4.34 8% [ALIGNMENT] -------
6 2dkb_ 4.17 9% [ALIGNMENT] -------
7 1qdla 4.07 9% [ALIGNMENT] -------
8 2hzba 4.01 10% [ALIGNMENT] -------
9 1fj2a 4.00 7% [ALIGNMENT] -------
10 2cexa 4.00 8% [ALIGNMENT] -------
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TEMPLATE: First 4 characters are for PDB ID, the fifth is chain ID
ZSCORE: Match is significant if ZSCORE > 5.79
SEQ ID: Sequence identity between query and template sequences
ALIGNMENT:Sequence alignment between query and template sequences
MODEL: Built by MODELLER 6 according to the above alignment
OTHER INFORMATION:
a) Significant score cutoff is based on LiveBench 8 test of 172 proteins
with > 100 residues
b) Link to PSI-BLAST OUTPUT: [26183364.blast]
c) Link to PSI-PRED OUTPUT: [26183364.sec]
d) Current template library has 12647 structures
Last updated at 2007-06-30 10:05:19.000000000 -0400 /home/hzhou/sparks/sp3npf/scop161_up.seq
e) Current sequence library has 806485 sequences
Last updated at [065.106] filtnr.phrOutput
f) Running time:
Job started at Wed Jul 4 13:22:11 EDT 2007
Job finished at Wed Jul 4 13:47:36 EDT 2007
g) This file can also be found within 20 days at
http://sparks.informatics.iupui.edu/info/sp4/26183364_fold.html
h) Reference: S. Liu, C. Zhang, S. Liang and Y. Zhou, in preparation (2006).