Programa de Doctorado
Departamento Biología Molecular - Universidad Autónoma de Madrid

Redes Biológicas y Biología de Sistemas

Bases de datos con información sobre redes biológicas

Protein-Protein Interaction Databases (Compiled by D. Juan (CNIO))
- Intact
- DIP - Database of Interacting Proteins
- MIPS - Comprehensive Yeast Genome Database. Includes information on different types of protein interactions.
- BIND - Biomolecular Interaction Network Database
- MINT
- The BIOGRID
- HPRD

Metabolic Databases
- KEGG - Main metabolic database. Metabolic network reconstructions for many organisms.
- EcoCyc - Focused on E coli.
- BRENDA - Focused on enzymes (including kinetic and thermodynamic parameters).
- UMBBD - Focused on bioremediation and biodegradation.

Gene Regulation Databases
- RegulonDB - Main source of information on E coli K12 regulatory network.
- DBTBS - Gene regulation in B Subtilis.