EVA: Detailed information for proteins added on: 2001_07_11

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_07_11	1j8f	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION, TRANSFERASE	MOLECULE: SIRTUIN 2, ISOFORM 1; CHAIN: A, B, C; SYNONYM: SIRT2; SIR2-RELATED PROTEIN TYPE 2; SILENCING INFORMATION REGULATOR 2-LIKE; SIR2-LIKE 2; SILENT MATING TYPE INFORMATION REGULATION 2, S.CEREVISIAE, HOMOLOG 2; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: SIRT2;	N.P.PAVLETICH,M.S.FINNIN,J.R.DONIGIAN	1j8f	2001_07_11
2001_07_11	1jfi	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/DNA	MOLECULE: TRANSCRIPTION REGULATOR NC2 ALPHA CHAIN; CHAIN: A; FRAGMENT: RESIDUES 1-77; ENGINEERED: YES; MOLECULE: TRANSCRIPTION REGULATOR NC2 BETA CHAIN; CHAIN: B; SYNONYM: DR1 PROTEIN; ENGINEERED: YES; MOLECULE: TATA-BOX-BINDING PROTEIN (TBP); CHAIN: C; FRAGMENT: RESIDUES 359-539; SYNONYM: TRANSCRIPTION INITIATION FACTOR TFIID; ENGINEERED: YES; MOLECULE: 5'- D(TPTPGPGPCPTPAPTPAPAPAPAPGPGPGPCPTPCPC) -3'; CHAIN: D; ENGINEERED: YES; OTHER_DETAILS: 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE TOP STRAND; MOLECULE: 5'- D(GGPAPGPCPCPCPTPTPTPTPAPTPAPGPCPCPAPA)- 3'; CHAIN: E; ENGINEERED: YES; OTHER_DETAILS: 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE BOTTOM STRAND	HOMO SAPIENS; HUMAN; GENE: NC2 ALPHA (DRAP1); HOMO SAPIENS; HUMAN; GENE: NC2 BETA (DR1); HOMO SAPIENS; HUMAN; GENE: TBP; SYNTHETIC: YES; SYNTHETIC: YES	K.KAMADA,F.SHU,H.CHEN,S.MALIK,G.STELZER,R.G.ROEDER, M.MEISTERERNST,S.K.BURLEY	1jfi	2001_07_11
2001_07_11	1jc5	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: METHYLMALONYL-COA EPIMERASE; CHAIN: A, B, C, D, E, F; EC: 5.1.99.1; ENGINEERED: YES	PROPIONIBACTERIUM SHERMANII; BACTERIA;	A.A.MC CARTHY,H.M.BAKER,S.C.SHEWRY,M.L.PATCHETT,E.N.BAKER	1jc5	2001_07_11
2001_07_11	1h5p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	NUCLEAR PROTEIN	MOLECULE: NUCLEAR AUTOANTIGEN SP100-B; CHAIN: A; FRAGMENT: RESIDUES 595-688; SYNONYM: SAND DOMAIN, KDWK DOMAIN, SPECKLED 100 KDA, NUCLEAR DOT-ASSOCIATED SP100 PROTEIN, LYSP100B; ENGINEERED: YES	HOMO SAPIENS; HUMAN; N-TERMINAL 6-HISTIDINE TAG AND A TEV PROTEASE CLEAVAGE SITE	M.J.BOTTOMLEY,Z.LIU,M.W.COLLARD,J.I.HUGGENVIK,T.J.GIBSON, M.SATTLER	1h5p	2001_07_11
2001_07_11	1hr7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT; CHAIN: A, C, E, G; SYNONYM: ALPHA-MPP; EC: 3.4.24.64; ENGINEERED: YES; MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT; CHAIN: B, D, F, H; SYNONYM: BETA-MPP; EC: 3.4.24.64; ENGINEERED: YES; MUTATION: YES	SACCHAROMYCES CEREVISIAE; YEAST; SACCHAROMYCES CEREVISIAE; YEAST;	A.B.TAYLOR,B.S.SMITH,S.KITADA,K.KOJIMA,H.MIYAURA, Z.OTWINOWSKI,A.ITO,J.DEISENHOFER	1hr7	2001_07_11
2001_07_11	1hr6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT; CHAIN: A, C, E, G; SYNONYM: ALPHA-MPP; EC: 3.4.24.64; ENGINEERED: YES; MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT; CHAIN: B, D, F, H; SYNONYM: BETA-MPP; EC: 3.4.24.64; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; SACCHAROMYCES CEREVISIAE; YEAST;	A.B.TAYLOR,B.S.SMITH,S.KITADA,K.KOJIMA,H.MIYAURA, Z.OTWINOWSKI,A.ITO,J.DEISENHOFER	1hr6	2001_07_11
2001_07_11	1hr9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT; CHAIN: A, C, E, G; SYNONYM: ALPHA-MPP; EC: 3.4.24.64; ENGINEERED: YES; MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT; CHAIN: B, D, F, H; SYNONYM: BETA-MPP; EC: 3.4.24.64; ENGINEERED: YES; MUTATION: YES; MOLECULE: MALATE DEHYDROGENASE; CHAIN: O, P, Q, R; FRAGMENT: RESIDUES 2-9; SYNONYM: MDH1; EC: 1.1.1.37; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; SACCHAROMYCES CEREVISIAE; YEAST; SYNTHETIC: YES; OTHER_DETAILS: THE 8 RESDIUE PEPTIDE OF MALATE DEHYDROGENASE WAS SYNTHESIZED USING STANDARD SOLID-PHASE FMOC SYNTHESIS METHODOLOGY	A.B.TAYLOR,B.S.SMITH,S.KITADA,K.KOJIMA,H.MIYAURA, Z.OTWINOWSKI,A.ITO,J.DEISENHOFER	1hr9	2001_07_11
2001_07_11	1hr8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT; CHAIN: A, C, E, G; SYNONYM: ALPHA-MPP; EC: 3.4.24.64; ENGINEERED: YES; MOLECULE: MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT; CHAIN: B, D, F, H; SYNONYM: BETA-MPP; EC: 3.4.24.64; ENGINEERED: YES; MUTATION: YES; MOLECULE: CYTOCHROME C OXIDASE POLYPEPTIDE IV; CHAIN: O, P, Q, R; FRAGMENT: RESIDUES 2-25; SYNONYM: COX4; EC: 1.9.3.1; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; SACCHAROMYCES CEREVISIAE; YEAST; SYNTHETIC: YES; OTHER_DETAILS: THE 24 RESIDUE PEPTIDE OF CYTOCHROME C OXIDASE POLYPEPTIDE IV WAS SYNTHESIZED USING STANDARD SOLID-PHASE FMOC SYNTHESIS METHODOLOGY	A.B.TAYLOR,B.S.SMITH,S.KITADA,K.KOJIMA,H.MIYAURA, Z.OTWINOWSKI,A.ITO,J.DEISENHOFER	1hr8	2001_07_11
2001_07_11	1ijy	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: FRIZZLED HOMOLOG 8; CHAIN: A, B; FRAGMENT: CYSTEINE-RICH DOMAIN; ENGINEERED: YES; MUTATION: YES	MUS MUSCULUS; MOUSE; GENE: FZD8;	C.E.DANN,J.C.HSIEH,A.RATTNER,D.SHARMA,J.NATHANS,D.J.LEAHY	1ijy	2001_07_11
2001_07_11	1ijx	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: SECRETED FRIZZLED-RELATED SEQUENCE PROTEIN 3; CHAIN: A, B, C, D, E, F; FRAGMENT: CYSTEINE-RICH DOMAIN; ENGINEERED: YES; MUTATION: YES	MUS MUSCULUS; MOUSE; GENE: SFRP-3;	C.E.DANN,J.C.HSIEH,A.RATTNER,D.SHARMA,J.NATHANS,D.J.LEAHY	1ijx	2001_07_11
2001_07_11	1jfi	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/DNA	MOLECULE: TRANSCRIPTION REGULATOR NC2 ALPHA CHAIN; CHAIN: A; FRAGMENT: RESIDUES 1-77; ENGINEERED: YES; MOLECULE: TRANSCRIPTION REGULATOR NC2 BETA CHAIN; CHAIN: B; SYNONYM: DR1 PROTEIN; ENGINEERED: YES; MOLECULE: TATA-BOX-BINDING PROTEIN (TBP); CHAIN: C; FRAGMENT: RESIDUES 359-539; SYNONYM: TRANSCRIPTION INITIATION FACTOR TFIID; ENGINEERED: YES; MOLECULE: 5'- D(TPTPGPGPCPTPAPTPAPAPAPAPGPGPGPCPTPCPC) -3'; CHAIN: D; ENGINEERED: YES; OTHER_DETAILS: 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE TOP STRAND; MOLECULE: 5'- D(GGPAPGPCPCPCPTPTPTPTPAPTPAPGPCPCPAPA)- 3'; CHAIN: E; ENGINEERED: YES; OTHER_DETAILS: 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE BOTTOM STRAND	HOMO SAPIENS; HUMAN; GENE: NC2 ALPHA (DRAP1); HOMO SAPIENS; HUMAN; GENE: NC2 BETA (DR1); HOMO SAPIENS; HUMAN; GENE: TBP; SYNTHETIC: YES; SYNTHETIC: YES	K.KAMADA,F.SHU,H.CHEN,S.MALIK,G.STELZER,R.G.ROEDER, M.MEISTERERNST,S.K.BURLEY	1jfi	2001_07_11

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field