EVA: Detailed information for proteins added on: 2001_07_04

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_07_04	1jg8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: L-ALLO-THREONINE ALDOLASE; CHAIN: A, B, C, D; EC: 4.1.2.5; ENGINEERED: YES	THERMATOGA MARITIMA; BACTERIA; GENE: TM1744;	C.L.KIELKOPF,J.BONANNO,S.RAY,S.K.BURLEY	1jg8	2001_07_04
2001_07_04	1jei	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: EMERIN; CHAIN: A; FRAGMENT: LEM DOMAIN (RESIDUES 2-54); ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: CHEMICAL SYNTHESIS	N.WOLFF,B.GILQUIN,K.COURCHAY,I.CALLEBAUT,S.ZINN-JUSTIN	1jei	2001_07_04
2001_07_04	1hzg	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: CYTOTOXIC NECROTIZING FACTOR 1; CHAIN: A; FRAGMENT: CATALYTIC DOMAIN; SYNONYM: CNF1; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA; GENE: CNF1;	L.BUETOW,G.FLATAU,K.CHIU,P.BOQUET,P.GHOSH	1hzg	2001_07_04
2001_07_04	1hq0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: CYTOTOXIC NECROTIZING FACTOR 1; CHAIN: A; FRAGMENT: CATALYTIC DOMAIN; SYNONYM: CNF1; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA; GENE: CNF1;	L.BUETOW,G.FLATAU,K.CHIU,P.BOQUET,P.GHOSH	1hq0	2001_07_04
2001_07_04	1e44	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RIBONUCLEASE	MOLECULE: COLICIN E3; CHAIN: B; FRAGMENT: RIBONUCLEASE DOMAIN RESIDUES 456-551; ENGINEERED: YES; MOLECULE: IMMUNITY PROTEIN; CHAIN: A	ESCHERICHIA COLI; OTHER_DETAILS: CO-EXPRESSED WITH A HIS-TAGGED IMMUNITY PROTEIN; ESCHERICHIA COLI;	S.CARR,D.WALKER,R.JAMES,C.KLEANTHOUS,A.M.HEMMINGS	1e44	2001_07_04

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field