EVA: Detailed information for proteins added on: 2001_04_04

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_04_04	1fjr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: METHUSELAH ECTODOMAIN; CHAIN: A, B; FRAGMENT: N-TERMINAL EXTRACELLULAR DOMAIN; ENGINEERED: YES	DROSOPHILA MELANOGASTER; FRUIT FLY;	A.P.WEST JR.,L.L.LLAMAS,P.M.SNOW,S.BENZER,P.J.BJORKMAN	1fjr	2001_04_04
2001_04_04	1fvz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIPID BINDING PROTEIN	MOLECULE: PHOSPHATIDYLINOSITOL TRANSFER PROTEIN; CHAIN: A; SYNONYM: PITP; ENGINEERED: YES	RATTUS NORVEGICUS; RAT; ORGAN: BRAIN;	M.D.YODER,L.M.THOMAS,J.M.TREMBLAY,L.R.YARBROUGH, G.M.HELMKAMP JR.	1fvz	2001_04_04
2001_04_04	1g5c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: BETA-CARBONIC ANHYDRASE; CHAIN: A, B, C, D, E, F; EC: 4.2.1.1; ENGINEERED: YES	METHANOBACTERIUM THERMOAUTOTROPHICUM; ARCHAEA;	P.STROP,K.S.SMITH,T.M.IVERSON,J.G.FERRY,D.C.REES	1g5c	2001_04_04
2001_04_04	1daq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: ENDOGLUCANASE SS; CHAIN: A; FRAGMENT: TYPE I DOCKERIN DOMAIN (RESIDUES 673-741); SYNONYM: CELS; EC: 3.2.1.4; ENGINEERED: YES	CLOSTRIDIUM THERMOCELLUM; BACTERIA;	B.L.LYTLE,B.F.VOLKMAN,W.M.WESTLER,M.P.HECKMAN,J.H.D.WU	1daq	2001_04_04
2001_04_04	1dp3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: TRAM PROTEIN; CHAIN: A; FRAGMENT: TRAMM26; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	T.STOCKNER,C.PLUGARIU,G.KORAIMANN,G.HOEGENAUER,W.BERMEL, S.PRYTULLA,H.STERK	1dp3	2001_04_04
2001_04_04	1e4u	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	MOLECULE: TRANSCRIPTIONAL REPRESSOR NOT4; CHAIN: A; FRAGMENT: RING FINGER DOMAIN; ENGINEERED: YES	HUMAN;	H.HANZAWA,M.J.DE RUWE,T.K.ALBERT,P.C.VAN DER VLIET,H.TH M.TIMMERS,R.BOELENS	1e4u	2001_04_04
2001_04_04	1i85	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	IMMUNE SYSTEM	MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD86; CHAIN: A, B; FRAGMENT: IG V-TYPE (RECEPTOR BINDING) DOMAIN; SYNONYM: B7-2; ENGINEERED: YES; MOLECULE: CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED PROTEIN 4; CHAIN: C, D; FRAGMENT: EXTRACELLULAR DOMAIN; SYNONYM: CTLA-4; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: CD86; HOMO SAPIENS; HUMAN; GENE: CTLA4;	J.-C.D.SCHWARTZ,X.ZHANG,A.A.FEDOROV,S.G.NATHENSON,S.C.ALMO	1i85	2001_04_04
2001_04_04	1io1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: PHASE 1 FLAGELLIN; CHAIN: A; FRAGMENT: F41 L-TYPE (RESIDUES 54-451); MUTATION: YES	SALMONELLA THYPHIMURIUM; BACTERIA; STRAIN: SJW 1660	F.A.SAMATEY,K.IMADA,S.NAGASHIMA,F.VONDERVISZ,T.KUMASAKA, M.YAMAMOTO,K.NAMBA	1io1	2001_04_04
2001_04_04	1iaz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: EQUINATOXIN II; CHAIN: A, B; SYNONYM: EQTII, TENEBROSIN C; ENGINEERED: YES	ACTINIA EQUINA; EUROPEAN SEA ANEMONE;	A.ATHANASIADIS,G.ANDERLUH,P.MACEK,D.TURK	1iaz	2001_04_04

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field