| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3...., |
| seq | GCLEFWWKCNPNDDKCCRPKLKCSKLFKLCNFSSG | | | |
| dssp | -------E--------------EE----EE----- | | | |
| apssp | ---EEEE-------------------HHE------ | -5.3 | -1.3 | -0.38 |
| apssp2 | ---EEEE------------HHHHHHHHHHH----- | -29.1 | -13.5 | -0.38 |
| phd | ---HHHHHH----HHHH---------EEEEEE--- | -16.6 | -19.0 | -0.23 |
| phdpsi | ---HHHHHH----HHHH---------EEEEEE--- | -20.1 | -22.0 | -0.28 |
| prof_king | ---EEEEE-----------------EEEEEE---- | -3.1 | -0.2 | -0.28 |
| profsec | -HHHHHHH-----HHHH------------------ | -19.6 | -39.4 | -0.36 |
| prospect_secstruc | ----HHHHHHHH-----------HHHHHHH----- | -17.3 | +3.6 | -0.22 |
| psipred | --EEEEEE-----------HHHHHHHHHHH----- | -23.6 | -11.2 | -0.19 |
| samt99_sec | --EEEEE---------------HHHHHHH------ | -15.5 | -7.8 | -0.21 |
| sspro2 | --EEEEE---------------HHHHHEEE----- | -11.2 | -3.4 | -0.25 |
| prospect | ----HHHHHHHH-----------HHHHHHH----- | -17.4 | +3.8 | -0.22 |