EVA results for 1ktd:A

DATE : 2002_05_01
TYPE : sec
NRES : 182
HEADER : IMMUNE SYSTEM
COMPND : 2 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-D
SOURCE : 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
AUTHOR : D.H.FREMONT, S.DAI, H.CHIANG, F.CRAWFORD, P.MARRACK, J.KAPPLER

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18.
seq	IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE
dssp	----EEEEEEEEEEE---EEEEEEEE--EEEEEEE----EEEE--HHHHH--E--HHHHHHHHHHHHHHHHHHHHH--------E--EEEEEE---------EEEEEEEEEEE----EEEEEE--EE----EEE---EE-----EEEEEEEEE-------EEEEEE-------EEEEE----
apssp	----EEEEEEEEEEE---EEEEEEEE--EEEEEEE-----EEE--HHHHHHHE--HHHHHHHHHHHHHHHHHHHHH--------E--EEEEEE---------EEEEEEEEEEE----EEEEEE--EE----EEE---E------EEEEEEEEE------EEEEEEE-------EEEEE----	+21.1	+27.1	+0.48
apssp2	----EEEEEEEEEEE---EEEEEEEE--EEEEEEE----EEEE--HHHHH--E--HHHHHHHHHHHHHHHHHHHHH--------E--EE-EEE---------EEEEEEEEEEE----EEEEEE--EE----EEE---EE-----EEEEEEEEE------EEEEEEE-------EEEEE----	+15.7	+18.3	+0.41
phd	----EEEEE--EEE-------EEEEE---EEEEE-----HHHHHHHHHHHHHHHHHHHH---E--EEEEEEEEEE-------------EEEE-----------EEEEEEEE-----EEEEEE-----------E----------EEEEEEEEEE-----EEEEEEE---------EEEE---	-0.7	+1.8	-0.02
phdpsi	-----EEE--EE---------EEEE----EEEEE------EEE-----------HHHHHHHHHHHHHHHHHHHHHH------------EEEE----------EEEEEEEEE-----EEEEEE----------------------EEEEEEEEEE-----EEEEEEE----------E-----	+3.4	+1.7	+0.15
profsec	-----EEEEEEEE-------EEEEEE---EEEEEE-----EEEE--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------------EEEEE---------EEEEEEEE------EEEEEEE---------EE-EEE------EEEEEEEEEE-----EEEEEEEE--------EEE----	+6.8	+16.2	+0.15
psipred	----EEEEEEEEEE------EEEEEE--EEEEEE----EEEEE-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----------EEEE-----------EEEEEEEEEEE---EEEEEEE--EEE---EEE--EEE-----EEEEEEEEE------EEEEEEE-------EEEE-----	+12.3	+20.9	+0.25
sspro2	-----EEEEEEEEE-------EEEE----EEEEEE-----E------HH-H----HHHHHHHHHHHHHHHHHHHHH-----------EEEEE----EE-----EEEEEE------EEEEEEEE---------------------EEEEEEEEE------EEEEEEE--------EEE-----	+2.9	+3.5	+0.11
jpred	-----EEEEEEEEE------EEEEEE---EEEEEE-----EEE----------------HHHHHHHHHHHHHHHHH------------EEEE-----------EEEEEE-------EEEEEE-----EE--EEEEEEE-----EEEEEEEEEE------EEEEEEE--------EEE-----	+5.0	+15.1	+0.11
prof_king	-EEEEEEEEEEEEEE-----EEEEEE---EEEEEEE---EEEEE-------------HHHHHHHHHHHHHHHHEE------------EEEEEE----------EEEEEE------EEEEEEEE---EEEEEEEEEEEEE-----EEEEEEEEEE-----EEEEEEEE-------EEEEE---	+3.3	+11.2	+0.06

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: May 15, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva