EVA results for 1kmd:A

DATE : 2002_06_12
TYPE : sec

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,..
seq	KMSEKLRIKVDDVKINPKYVLYGVSTPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKPN
dssp	--------EEEEEEE----EEEEEE-----EEE-HHHHHHHHHHHHHHH-------------------------HHHHHHHH--HHHHHHHHH------HHHH-HHHHHH-------
apssp	----EEEEEE---E---EEEEEE------HHHHHHHHHHHHHHHHHE-----------------------------HHHHHHHHHHHHHHHH---------HHHHHHHHHHH-----	-2.0	+1.4	-0.11
apssp2	----EEEEEE-EEEE---EEEEE-----HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH---HHHHHHHHH-HHHHHHHHHH---------HHHHHHHHHH----	-11.3	-11.2	-0.23
phd	-----EEE-EEEEEEEEEEEEEEEE----EEEE-HHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHH----------HHHE---E------	+11.5	+9.6	+0.22
phdpsi	-----EEE-EEEEEEEEEEEEEEEE----EEEE-HHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHH----------HHHE---E------	+7.8	+6.4	+0.16
profsec	-------EEEEEEEEEEEEEEEEEEE---EEEEEHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-----	+7.2	+3.5	+0.18
psipred	----EEEEEEEEEEE--EEEEEE-----HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH----HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH----	-5.2	-9.1	-0.08
samt99_sec	---HHHEEEE---E----EEEE------HHHHHHHHHHHHHHHHHHH------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----	-7.9	-15.2	-0.09
sspro2	----EEEEEE--EEE---EEEEE-----HHHHHHHHHHHHHHHHHHH------------------HHHHH----HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH----	-2.5	-6.6	-0.05
jpred	------------------EEEEEE------HHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHH----------HHHHHHHH------	+6.3	+5.2	+0.06
prospect_secstruc	-----------------EEEEE-EEE----------------------------HHHHHHH---------------------------------------------EE-HHHHHH--	-27.3	-41.5	-0.18
prospect	-----------------EEEEE-EEE----------------------------HHHHHHH---------------------------------------------EE-HHHHHH--	-29.0	-43.6	-0.20

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Oct 7, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva