| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3....,....4.. |
| seq | SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP | | | |
| dssp | --EEEEEEE------HHHHHHHHHHHHH----EEEEEE---- | | | |
| apssp | --EEEEE---------HHHHHHHHHHHH----EEEEE----- | +13.7 | +27.9 | +0.33 |
| apssp2 | --EEEEE------HHHHHHHHHHHHHHHH---EEEEE----- | +2.2 | +18.9 | +0.12 |
| jpred | ---EEEE---------HHHHHHHHHHHHH---EEEEE----- | +11.8 | +28.3 | +0.29 |
| phd | --EEEEEE------HHHHHHHHHHHHHHH--EEEEEEE---- | +19.5 | +30.6 | +0.43 |
| phdpsi | --EEEEEE------HHHHHHHHHHHHHHH--EEEEEEE---- | +16.0 | +27.6 | +0.38 |
| prof_king | --EEEEE---------HHHHHHHHHHHH---EEEEEE----- | +13.5 | +29.4 | +0.33 |
| profsec | --EEEEEE--------HHHHHHHHHHHH----EEEEE----- | +16.1 | +26.9 | +0.41 |
| prospect_secstruc | --EEEEE----------HHHHHHHHHHHH---EEEEE----- | +14.0 | +30.8 | +0.29 |
| psipred | --EEEE---------HHHHHHHHHHHHHH--EEEEEEE---- | +10.1 | +20.6 | +0.26 |
| samt99_sec | --EEEEEE-------HHHHHHHHHHHHH----EEEEE | +21.7 | +29.2 | +0.55 |
| sspro2 | --EEEEE--------HHHHHHHHHHHHH----EEEEE----- | +15.9 | +27.9 | +0.45 |
| prospect | --EEEEE----------HHHHHHHHHHHH---EEEEE----- | +13.9 | +31 | +0.29 |