EVA results for 1gnl:A

DATE : 2002_04_17
TYPE : sec

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18...,....19...,....20...,....21...,....22...,....23...,....24...,....25...,....26...,....27...,....28...,....29...,....30...,....31...,....32...,....33...,....34...,....35...,....36...,....37...,....38...,....39...,....40...,....41...,....42...,....43...,....44...,....45...,....46...,....47...,....48...,....49...,....50...,....51...,....52...,....53...,....54..
seq	SNAMFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLRAEGKAVDHRIDRLVTGNLFATITNANFDDDILAERVRMTCAAKKELAASLTDKSGLSDAALWEASEKSAMLAKAGTVGVMATTDDDVRSLRWLITFGLKGMAAYAKHADVLGKHENSLDAFMQEALAKTLDDSLSVADLVALTLETGKFGVSAMALLDAANTGTYGHPEITKVNIGVGSNPGILISGHDLRDLEMLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYAHFKGNYGNAWWKQKEEFESFNGPVLLTTNCLVPPKDSYKDRVYTTGIVGFTGCKHIPGEIGEHKDFSAIIAHAKTCPAPTEIESGEIIGGFAHNQVLALADKVIDAVKSGAIKKFVVMAGCDGRAKSRSYYTDFAEGLPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLDAGQCNDSYSLAVIALKLKEVFGLEDVNDLPIVYNIAWYEQKAVIVLLALLSLGVKNIHLGPTLPAFLSPNVAKVLVEQFNIGGITSPQDDLKAFF
dssp	-----E------HHH--E---------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-----E--HHHHHHHHHHHHHHHHHHHH---------HHHH-----HHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEEE-------EEEEE---HHHHHHHHHHH-----EEEE-HHHHHHHH-HHHHH---EEEE----HHHHHHHHHHH---EEE---------HHHH--EEEE---E----EEE----------HHHHHHHH-----------EEEE---HHHHHH-HHHHHHHHH-----EEEE--E-----HHHHHHHHHHHH----EEEEE--HHHHH-------EE--EE-EEE---HHHHHHHHHHHHHHHHH-----HHH--EEEEEE---HHHHHHHHHHHH------EEE--------HHHHHHHHHHH--E----HHHHHHH--
apssp	---EE-EEEHH--------EEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH--EEEEE-----HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH---EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH------HHHHHHHHHHH-HHHHHHHHHHHHH----------EEEEEE-----EEEEE---HHHHHHHHHHH-----EEEE-------------HHHHHHH---E------HHHHHH----EEE---EEE---------EEEEEEEE----EE-----------HHHHHHHH------------EEE---HHHHHHHHHHHHHHHHH----EEEEE-E--------HHH-HHH------EEEEE--HHHHH-------EE--EE-EEE---HHHHHHHHHHHHHHHHH----------HHHHHE---HHHHHHHHHHHHH-----E----------HHHHHHHHHH---------HHHHHH--	+3.2	+2.8	+0.01
apssp2	---EEEEEE----------E-------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----------HHH----HHHHHH---EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH------HHHHHHHHHHH-HHHHHHHHHHHHHH---------EEEE-------EEEEE---HHHHHHHHHHH-----EEEE--E-HH----HHHHH--HHH-------HHHHHHHHH----EEE--------HHHHH------EEE-----------------HHHHHHHHHH----------EEEEE--HHHHHHHHHHHHHHHHH----EEEEEEE---------HHHHHHH-----EEEEE--HHHHH-------EE--EE-EEE---HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH------EE---------HHHHHHHHHH--------HHHHHHH--	+1.0	+1.5	-0.06
jpred	----EEEEE---------EEE-------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH--EEEE-----HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH-----EEE----HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-----------EEEEE------EEEEE---HHHHHHHHHHH----EEEEE-------------HHHHHHH-------HHHHHHH------EEE---EEE--------EEEEEEEE-----------------HHHHHHHHH-----------EEEE--HHHHHHHHHHHHHHHHHH---EEEEEEE---------HHHHHHHH-----EEEEEE---HHHH----------------------HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH----EEE---------HHHHHHHHHH---------HHHHHH--	+1.8	+6.1	-0.01
phd	----EEEE------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHE-----HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH-----E-------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHH----------EEEEEE-----EEEEE---HHHHHHHHHHH----EEEEE--------------------------HHHHHHHHHH----EEEE---EE--------EEEEEEEE-----------------HHHHHHHHHH----------EEEE--HHHHHHHHHHHHHHHHHH---EEEEEEE-------HHHHHHHHHHH----EEEEE--------EEE-----------------HHHHHHHHHHHHHHHH-----------EEEHHHHHHHHHHHHHHHHHH---EEEE---------HHHHHHHHHH--------HHHHHHHH-	+7.6	+3.3	+0.11
phdpsi	-----HHHHHH-------EE------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHE-----HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH-----EE-------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHH--------EE--------EEEEE---HHHHHHHHHHH-----EEEE------------HHHHHHHH----HHHHHHHHHHHH----EEEE----------HHHEEEEEEEEE--------------HHHHHHHHHHHH----------EEEE---HHHHHHHHHHHHHHHHH--EEEEEEEE---------HHHHHHHHHH---EEEEE------EE---------------------HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH----EEE---------HHHHHHHHHHH-------HHHHHHHH-	+3.0	+3.7	0.00
prof_king	--EEEHHHHH---------EEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH--------EEE---HHHHHHH---EEEEEE----HHHHHHHHHHH---HHHHHHHHHHH-----HHHHHHHHHHHHHH------HHHHHHHHHHH----HHHHHHHHH-----------EEEE-------EEEEE---HHHHHHHHHHHH----EEEE------------HHHHHHHH----------HHHHH-----EEEE---E-----HHH--EEEEEEE-----E-----------HHHHHHHHHH----------EEEE---HHHHHHHHHHHHHHHHH---EEEEEEE----------HHHHHHHH----EEEEEE--HHHHH----------------------HHHHHHHHHHHHHH-----------EEE--HHHHHHHHHHHHHHHH---EEEE---------HHHHHHHHHH---------HHHHHHH-	+1.4	+0.4	-0.00
profsec	-----HHHHHHH------EE-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH----EEEE------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH------HHHHHHHHHHHH---HHHHHHHHHHH----------EEEEE-----EEEEE---HHHHHHHHHHHH----EEEE-----------HHHHHHHHH-----HHHHHHHHHHH----EEEE-------------EEEEEEEEE--------------HHHHHHHHHHHH----------EEEE---HHHHHHHHHHHHHHHH---EEEEEEEE---------HHHHHHHHH----EEEEE------------------------------HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH----EEEE---------HHHHHHHHHH---------HHHHHHH-	-0.0	-0.6	-0.04
psipred	---EEEEEE------------------HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----------------HHHH--------EE------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----EEEEE-------EEEEE---HHHHHHHHHHHH---EEEE-----------------------------HHHHHHHH----EEEEE------HHHH---EEEE--------------------HHHHHHHHHH----------EEEEE--HHHHHHHHHHHHHHHH-----EEEEEEE---------HHHHHHHH----EEEEE-HHHHHHHH---------------------HHHHHHHHHHHHHHH---------EEEEEHHHHHHHHHHHHHHHH------EE---------HHHHHHHHHH-----------------	+2.9	+0.5	+0.02
sspro2	---EEEEE-HH-------EEE------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---------HE---HHHHHHH---EEEEEE-----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH------HHHHHHHHHHH---HHHHHHHHHHH----------EEEE-------EEEEE---HHHHHHHHHHH----EEEEE----------HHHHH---H-------HHHHHHHHHH----EEEE---E------H--EEEE----------E----------HHHHHHHHHH-----------EEE---HHHHHHHHHHHHHHHH-----EEEEEE---------HHHHHHHH-----EEEEEE---HEEE-------------EEE-----HHHHHHHHHHHHHHHH---------EEEEHHHHHHHHHHHHHHHHHH----EEE---------HHHHHHHHHH---------HHHHHHH-	+2.8	+4.5	+0.01

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: May 1, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva